RNA id: TU66275



Basic Information


Item Value
RNA id TU66275
length 243
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G52945
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16369172 ~ 16369414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGAACAACTACGGAAAGAGGAACACTCATTAACCATGTGTATGTTAAAGATATTGATAATGTTGCTATTCAGGTGCTACcgacatatttcagttttaatgagGCTATTTCTGTCACATTGACTTAAGCAATTTGTGTGATAGAAACATCCGTCCGCAATATCAGGGGGGGTAGGGGTGTAAGCATAAAAGAGGACGGCACCccaaataaagttttattataGTGGGGGTTCAGAACCAGAGC

Function


GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66263 lncRNA upstream 24494 16344256 ~ 16344678 (+) True G52933
TU66261 lncRNA upstream 25096 16343016 ~ 16344076 (+) True G52931
TU66218 lncRNA upstream 49320 16311392 ~ 16319852 (+) True G52896
TU66212 lncRNA upstream 124229 16243537 ~ 16244943 (+) True G52890
TU66199 lncRNA upstream 159128 16208948 ~ 16210044 (+) True G52877
TU66276 lncRNA downstream 26866 16396280 ~ 16396481 (+) True G52946
TU66368 lncRNA downstream 284779 16654193 ~ 16654923 (+) True G53025
TU66382 lncRNA downstream 310411 16679825 ~ 16683932 (+) False AMCG00008985
TU66396 lncRNA downstream 361975 16731389 ~ 16737398 (+) True AMCG00008988
TU66402 lncRNA downstream 377273 16746687 ~ 16750798 (+) True AMCG00008986
AMCG00008972 mRNA upstream 235112 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 314647 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 376622 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 418147 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 437193 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008978 mRNA downstream 61403 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 178203 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 191608 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 210449 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 230246 16599660 ~ 16602244 (+) True AMCG00008982
TU66272 other upstream 6661 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 505518 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1559886 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1574200 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1574200 14792344 ~ 14794972 (+) False AMCG00008920
TU66345 other downstream 210449 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 303089 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 961478 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1359952 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1548252 17917666 ~ 17920053 (+) False AMCG00009009

Expression Profile