RNA id: TU66385


Basic Information

Item Value
RNA id TU66385
length 216
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G53042
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16673709 ~ 16729192 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctccctccacctctNCTTCTGACttccttctccccctctccttctctccccgtCTCAGCCCGCTGAAGAACATCAGAGACGGGCCCTACAATGGTTCTAGAATCTGGATGATCCGACTCCAGATTCCAGGTGGCCAGCACCTCTGCCgtcccttcctcctccctctctccctccatcttccTCCTCTGTTCCCtccctacctctctctctctctc

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66334 lncRNA downstream 132154 16541268 ~ 16541555 (-) True G52999
TU66274 lncRNA downstream 310830 16362622 ~ 16362879 (-) True G52944
TU66268 lncRNA downstream 321409 16352012 ~ 16352300 (-) True G52938
TU66257 lncRNA downstream 359724 16311392 ~ 16313985 (-) True G52929
TU66243 lncRNA downstream 419570 16238758 ~ 16254139 (-) True G52918
TU66457 lncRNA upstream 18659 16747851 ~ 16750617 (-) True G53096
TU66464 lncRNA upstream 104139 16833331 ~ 16837563 (-) True G53102
TU66498 lncRNA upstream 272818 17002010 ~ 17002218 (-) True G53127
TU66505 lncRNA upstream 310915 17040107 ~ 17040680 (-) True G53134
TU66513 lncRNA upstream 331616 17060808 ~ 17061551 (-) True G53142
AMCG00008980 mRNA downstream 154143 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 335001 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008976 mRNA downstream 351078 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008977 mRNA downstream 375453 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008974 mRNA downstream 384337 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008987 mRNA upstream 53587 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008989 mRNA upstream 94603 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008992 mRNA upstream 241040 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008994 mRNA upstream 475898 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 872640 17601832 ~ 17611358 (-) True AMCG00008998
TU66358 other downstream 59248 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 268583 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 599774 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 710092 15957667 ~ 15963617 (-) True G52834
TU66061 other downstream 821900 15841664 ~ 15851809 (-) False AMCG00008964
TU66472 other upstream 123837 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 1007397 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1139194 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3471555 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3523712 20252904 ~ 20264085 (-) False G53809

Expression Profile