RNA id: TU66419



Basic Information


Item Value
RNA id TU66419
length 420
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G53069
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16835612 ~ 16858245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccataCTGTgggcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatgatatatattttcattaaacaagcTTTGGAGGGCTTGTGATCtgaatttattgtaaaatgtcagCCCAGTAGATAGCAATAGAACCGCTTCACACCAAAAATCACAGCAAGCCCTTCCTTCTCCAGTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU66402 lncRNA upstream 84814 16746687 ~ 16750798 (+) True AMCG00008986
TU66396 lncRNA upstream 98214 16731389 ~ 16737398 (+) True AMCG00008988
TU66382 lncRNA upstream 151680 16679825 ~ 16683932 (+) False AMCG00008985
TU66368 lncRNA upstream 180689 16654193 ~ 16654923 (+) True G53025
TU66276 lncRNA upstream 439131 16396280 ~ 16396481 (+) True G52946
TU66480 lncRNA downstream 100268 16958513 ~ 16959031 (+) True G53115
TU66499 lncRNA downstream 151277 17009522 ~ 17009721 (+) True G53128
TU66502 lncRNA downstream 161440 17019685 ~ 17019964 (+) True G53131
TU66508 lncRNA downstream 188769 17047014 ~ 17048098 (+) True G53137
TU66510 lncRNA downstream 193228 17051473 ~ 17051675 (+) True G53139
AMCG00008991 mRNA upstream 37083 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 87219 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 98113 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008985 mRNA upstream 109317 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008984 mRNA upstream 164182 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008993 mRNA downstream 302840 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008995 mRNA downstream 478475 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 565201 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 634236 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 930275 17788520 ~ 17796297 (+) True AMCG00009003
TU66371 other upstream 162070 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 251683 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 473101 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 971958 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 2026326 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 472647 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 871121 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1059421 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1692527 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4309986 21168231 ~ 21168575 (+) True G53911

Expression Profile


TU66419 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU66419 Expression in each Bioproject

Bar chart with 7 bars.
TU66419 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 35.
End of interactive chart.