RNA id: TU66457


Basic Information

Item Value
RNA id TU66457
length 2718
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G53096
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16747851 ~ 16750617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagacacagacacTAATCCAGAATATTACTGTTTATTTCTGAGAACATCAGCTAGAATTATGATGCAGTTTAAATCCCCATTCATGTACCTCAGCTGAAAACAGTTATCctacaatatacatacatacatatacgtACATACCCTTCTATATATTGAAATTCAAATCATATGTGTAAcatctgaaattatttttttttatctcattaaatatatttgttcaaaGTCTTCATGTATTATATcatagtatatttatttattcatttttaaaagaaataaattattgattCTAACAATTATtctgcatctctgtctctacTCTCActcttctttctctcccccttctctcttgCTCTCTCTCTCCTGccacactgagacagagagattgacagagagagggagagagaggcaaagACGCAGTGATACAGCACATCGTTTTAGAATCAAATTTGTTCatgaattgtaatattttttatctttttgtaaatatttttttaaataacaaacattaatattttatcattattattttaattctttataaCATCATGTTTGGAAGACAAAGATTCTGCAGAACTTTGAAAATATTACACCTCTATCTTCACCATCatctttatcatcatcatcatcatcattattatgattattattattatgtagctctatatacaaatacattcatCAAAATTATAATCCAATAATCTTGTGTATGTGTctgcctgcgtgtgtgtgtgtgtgtgtcattgtgtgtgagagtgtgagtgtgtatgtctGTCCCGTATGTATTATAGATAAAGTATACATTGACactcaggcagacagacagataaactCACTTACTCCATTTCTTTGttaaagagcgagagagagggggaaagggggagagagattgAGTAGACCTTGTTATCAGCCAAAGAGGTAGATAGatctatagatagatagatagatagatagatagatagatagatagatatatagatagattgacagatatacagatatagaGAAAGCCCTTTATTATACAATTACTgcaaaagagacagagagagcaaaatagagggagagggagatggggggcAGTGTTGAGTTCCAGATACcgttctctgtctgtctttctctctttctccatctatCTATCCCTCAGTTTCTCTGTCTCATTCTGTCTGTCATGATCATATTTGTAGCTGTGAACTACAGAATAAAGCTACATAATTaaactctctcactctcactctctctcagatcTGTATAGCATCTGTCTGTCTTGCATGCTCAGTTTATATtgcaatacattgtttcaaagtgtAATTGCTATCTTGTTAAAGCCTGTCAGGTCTACCCTTTTGGGGTCCAAACATCACAGAAAATATCCCAaattatgcatatatacacacacgcaggcGCACACACAtcaactatatacatatatgtacactACATTGACTTAAAATAAGAATCTGATTCATAGTAATGATGATTAAGTGAGAGAAACAGCGCCCACAGCTATATTCAGGCACACATGAGAACTGCAGCtcactcaataataataataataataataataataataatacagtggtAAACAGCGCCCCTTATCTCTGTTCAGGCACACATAGGAACTGTAGCTCACtgtcactaataataatattggtcataataatgatgatgataataataataataataataataatacagtgggAAACAGCGCCCCTCTCTCTGTTCAGGCACACAGGAGAACTGTAGCTCACAGttgtagtattaataatattcttCATCATTGTTAATAGCTGTAAGAGCATCACAGCCGACCCACTTCTGTCCAAGCTGAAAATCCAGTCTTAATGTTAATGAGCGTCCGCTAATAAGGAAGGGCAGTGTTAGTTAATTGTCTATCCATCCCTCCACTGCACTCCCTCTGCTTCCTCATTCCCCTCTTCCAGAAGCTTGGGGATGGAGTGATGATGAGGAGGAGAGTATGTCAGCTGGGATGTCGGGATGGGGGCGTGGGGGGGAGCATAAGGTTAATATCCCATTGTTCATCCTTGTGAGAcagtcctcctctctctccatctctcccttcctctctttttttctctgttgGTAGAGTCTGTTGCAGGTGCAGTATTTTGCCAAGTTACAGTGTTGTACTGCTGCGCATAGGGGGCTTGCGTGTTAGGACGTCTCTCCAAACAACCCCCCCGCCACCAAAAGTTGGCCATCTTGGTAGAGTACTGTGTCCATCTTCCTCCTACCCCGAATTCTCTCTGCTGGAGTAAAGGGGGAGCTGGGGAAAGGGGCAGTGATATTATATGAATACTGATGAGTGGTTTCCATGCAGACGGGGGTCAGTTGCATGGGGGAAATTTCACTGTGGCGACGGGGTTCCACAACTCAACTGAGAGTTCTGTAGGTGTCTATCAAAATattgtccctccctccctctctccctacctctctctctctctgtctctccctatCTCTCAGTCAATCTGTCTGTAAAAGAGGAAGGGAGGTGTGCAGAAATTTGTCTgtctaactgtgtgtgtgtaagtgtgtgtctgtgtgagtatgtctttgtgtgtgtgtgtgtgcgtgagtatgtttgtgtgagagtatgtgtctctctctcactcctcaGCTATGAGTGCCCTCatccctccttctctccatcCGTCCCTCCCGAGGAGAAAGGGCAGACACTGGGAATGGAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66385 lncRNA downstream 18659 16673709 ~ 16729192 (-) True G53042
TU66334 lncRNA downstream 206296 16541268 ~ 16541555 (-) True G52999
TU66274 lncRNA downstream 384972 16362622 ~ 16362879 (-) True G52944
TU66268 lncRNA downstream 395551 16352012 ~ 16352300 (-) True G52938
TU66257 lncRNA downstream 433866 16311392 ~ 16313985 (-) True G52929
TU66464 lncRNA upstream 82714 16833331 ~ 16837563 (-) True G53102
TU66498 lncRNA upstream 251393 17002010 ~ 17002218 (-) True G53127
TU66505 lncRNA upstream 289490 17040107 ~ 17040680 (-) True G53134
TU66513 lncRNA upstream 310191 17060808 ~ 17061551 (-) True G53142
TU66518 lncRNA upstream 331061 17081678 ~ 17082065 (-) True G53147
AMCG00008980 mRNA downstream 228285 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 409143 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008976 mRNA downstream 425220 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008977 mRNA downstream 449595 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008974 mRNA downstream 458479 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008987 mRNA upstream 32162 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008989 mRNA upstream 73178 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008992 mRNA upstream 219615 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008994 mRNA upstream 454473 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 851215 17601832 ~ 17611358 (-) True AMCG00008998
TU66358 other downstream 133390 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 342725 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 673916 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 784234 15957667 ~ 15963617 (-) True G52834
TU66062 other downstream 896042 15841664 ~ 15851809 (-) True AMCG00008964
TU66472 other upstream 102412 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 985972 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1117769 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3450130 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3502287 20252904 ~ 20264085 (-) False G53809

Expression Profile