RNA id: TU66464


Basic Information

Item Value
RNA id TU66464
length 795
lncRNA type intronic
GC content 0.52
exon number 2
gene id G53102
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16833331 ~ 16837563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGGTTTATGGgagacattatttaaaaaaccgCCAGAGACTGGgataaagtgaaacaaaatatgtgGAAAGTTGCTGAGAGAGTGCGTGTGAGTAATAGCACATAGACAGTCGAGCAGGCGAGTTTACACCGCCCTGTGTCACCAATTTAAAACcgaaacaagacaaaataaaagcttGACTGACAAGGAGAACTGCGAGCAACGTCACACAGCTGCTCGATACAACTATAAAGACTGCTGTTGCTACTGCCACAGGAGTCTAGTAGTATCCTGCAGTGGACGGGACTACGCAGCCAAACTGGTACCCAGcgaccggacctaccaagtgacatggcgaggttcctcatccaccccccaacatatcctcacaggcgttccccaaggctccatcctgggcctgctcctgttctctctctacactcgctccctgggccccctcattgcatcccatggtttctcctaccacttctacgctgatgatgccaagatcttcttgtcttttccctcttctgaccctctcatcccctctcacatctcttcctgcttgtctgctatctccgcctggatgcactcacaccacctcaagctcaacctctccaaatcggatctcctgttttttacctcactcttcctcaccttctgctgacctccccatctcgatccccttggaatctaccacactctgctcgtccagtcactggtcctctcccgcctggactactgcaacttcCTCCTAggcggcctgcctgcaactactacccgcccactccagctcatccagaactctgcggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66457 lncRNA downstream 82714 16747851 ~ 16750617 (-) True G53096
TU66385 lncRNA downstream 104139 16673709 ~ 16729192 (-) True G53042
TU66334 lncRNA downstream 291776 16541268 ~ 16541555 (-) True G52999
TU66274 lncRNA downstream 470452 16362622 ~ 16362879 (-) True G52944
TU66268 lncRNA downstream 481031 16352012 ~ 16352300 (-) True G52938
TU66498 lncRNA upstream 164447 17002010 ~ 17002218 (-) True G53127
TU66505 lncRNA upstream 202544 17040107 ~ 17040680 (-) True G53134
TU66513 lncRNA upstream 223245 17060808 ~ 17061551 (-) True G53142
TU66518 lncRNA upstream 244115 17081678 ~ 17082065 (-) True G53147
TU66529 lncRNA upstream 271498 17109061 ~ 17109711 (-) True G53156
AMCG00008987 mRNA downstream 49309 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008980 mRNA downstream 313765 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 494623 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008976 mRNA downstream 510700 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008977 mRNA downstream 535075 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008992 mRNA upstream 132669 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008994 mRNA upstream 367527 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 764269 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 778165 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008999 mRNA upstream 818032 17655595 ~ 17664736 (-) True AMCG00008999
TU66358 other downstream 218870 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 428205 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 759396 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 869714 15957667 ~ 15963617 (-) True G52834
TU66062 other downstream 981522 15841664 ~ 15851809 (-) True AMCG00008964
TU66472 other upstream 15466 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 899026 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1030823 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3363184 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3415341 20252904 ~ 20264085 (-) False G53809

Expression Profile