RNA id: TU66502


Basic Information

Item Value
RNA id TU66502
length 280
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G53131
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17019685 ~ 17019964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTAGCTCAGGTAGCACACCTTCCAGAAAAGGTAGCAGTAGTTAAAGTGAAAGCTCATCAGAGTCTTTCTGATGATGGATGCCCGCGCACCAGTGGGAATCACTTTGCAGACCTAGCTGCGAAAAAGGCAGCAGAGACAGGCAGTCATGTGACGTTAGCAGGATTCGCCTGCTCTAGTAAAGTTGCGAGAATTCTAGAACCAGAAACTACTGACCTCGCACAGCTACAGAAAGACTGTGAGGAGGATGAAGTACAAGAGTGGGTTAGGGGAGGTGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66499 lncRNA upstream 9964 17009522 ~ 17009721 (+) True G53128
TU66480 lncRNA upstream 60654 16958513 ~ 16959031 (+) True G53115
TU66419 lncRNA upstream 161440 16835612 ~ 16858245 (+) True G53069
TU66402 lncRNA upstream 268887 16746687 ~ 16750798 (+) True AMCG00008986
TU66396 lncRNA upstream 282287 16731389 ~ 16737398 (+) True AMCG00008988
TU66508 lncRNA downstream 27050 17047014 ~ 17048098 (+) True G53137
TU66510 lncRNA downstream 31509 17051473 ~ 17051675 (+) True G53139
TU66528 lncRNA downstream 89115 17109079 ~ 17109684 (+) True G53155
TU66530 lncRNA downstream 92152 17112116 ~ 17113008 (+) True G53157
TU66551 lncRNA downstream 291504 17311468 ~ 17311668 (+) True G53176
AMCG00008990 mRNA upstream 176967 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008991 mRNA upstream 221156 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 271292 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 282186 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008985 mRNA upstream 293390 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008993 mRNA downstream 141121 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008995 mRNA downstream 316756 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 403482 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 472517 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 768556 17788520 ~ 17796297 (+) True AMCG00009003
TU66371 other upstream 346143 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 435756 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 657174 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1156031 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 2210399 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 310928 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 709402 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 897702 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1530808 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4148267 21168231 ~ 21168575 (+) True G53911

Expression Profile