RNA id: TU66505


Basic Information

Item Value
RNA id TU66505
length 574
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G53134
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17040107 ~ 17040680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATGGGTTTAGTTGCGAGCTTAGCGATGTTCAAAATATCAACAAAGAGGCTGAAGATGTTCGGGGGAGTAACCATAGATCAaatgatggtggtggtggggattGCCATAATATCGATGCTGATAATAATGATGGGGGTGTAGAGCATGTAGACAGACCAAACTTCagtaattttgaaattgttcaCAGATTTAGCTTTGCAGAATTATTCAACAGCGACAATTATGCAGAGATATTTGTTACAATGCatgatattatacaaaatatgcttGATCGAATTACCAAATGTGTTAGACCCCAGGATGTGGTACAGTTGGAGCTGAGAGTGGATTcattatttagcagtgtttttacCATAATGAGAGGTGATGAGTTAGATGTTGAGGCTTTTCTATCTAAAattgaaaacctgcttcagagtCAAGCCTCCATCCTGGCCGATGAAAGTCTGGTCTTGGTCATTAACGTTGTTCATAACCCTGAGGGTGGTGTTCGTTGGAGATTGTCAAGTTGTCTCAAGACTGAAATAATTCATAAGAAACTCAGGCAAATAGTGAATGAgggtaatacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66498 lncRNA downstream 37889 17002010 ~ 17002218 (-) True G53127
TU66464 lncRNA downstream 202544 16833331 ~ 16837563 (-) True G53102
TU66457 lncRNA downstream 289490 16747851 ~ 16750617 (-) True G53096
TU66385 lncRNA downstream 310915 16673709 ~ 16729192 (-) True G53042
TU66334 lncRNA downstream 498552 16541268 ~ 16541555 (-) True G52999
TU66513 lncRNA upstream 20128 17060808 ~ 17061551 (-) True G53142
TU66518 lncRNA upstream 40998 17081678 ~ 17082065 (-) True G53147
TU66529 lncRNA upstream 68381 17109061 ~ 17109711 (-) True G53156
TU66564 lncRNA upstream 302762 17343442 ~ 17343782 (-) True G53188
TU66673 lncRNA upstream 613445 17654125 ~ 17655208 (-) True G53286
AMCG00008992 mRNA downstream 50681 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008989 mRNA downstream 175683 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008987 mRNA downstream 256085 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008980 mRNA downstream 520541 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 701399 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008994 mRNA upstream 164410 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 561152 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 575048 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008999 mRNA upstream 614915 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009001 mRNA upstream 684039 17724719 ~ 17741782 (-) True AMCG00009001
TU66472 other downstream 126808 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 425646 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 634981 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 966172 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1076490 15957667 ~ 15963617 (-) True G52834
TU66702 other upstream 695909 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 827706 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3160067 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3212224 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 5142408 22183088 ~ 22183565 (-) True G54003

Expression Profile