RNA id: TU66518


Basic Information

Item Value
RNA id TU66518
length 388
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G53147
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17081678 ~ 17082065 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATGCATGCCATacgtatttattcatttttttgcctATATATGTTACTGTGAAGTgactttatattgtattttatattattttgctaCTGATTGTATGTCTGGCATGAACTATgtcatcatattttttattttattgttatagtCCTATGTCCCTCTGTACTATGTCATTATGTTATGTGATGTTATGTATGCACTTAAGTGAATACTTAAGTGAATCAAATcctgtatataaaatgaaagctCAATTTGAATATGTTAATATCTTGAAAATGTCACTTGCATTTCTCTGGTTCTGACCCCCTAATGGGTACCTATAGCAAATCCCAGGCCTGgtagtatatacagtattgaCAGGAATGGggtttacatttccattactGTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66513 lncRNA downstream 20127 17060808 ~ 17061551 (-) True G53142
TU66505 lncRNA downstream 40998 17040107 ~ 17040680 (-) True G53134
TU66498 lncRNA downstream 79460 17002010 ~ 17002218 (-) True G53127
TU66464 lncRNA downstream 244115 16833331 ~ 16837563 (-) True G53102
TU66457 lncRNA downstream 331061 16747851 ~ 16750617 (-) True G53096
TU66529 lncRNA upstream 26996 17109061 ~ 17109711 (-) True G53156
TU66564 lncRNA upstream 261377 17343442 ~ 17343782 (-) True G53188
TU66673 lncRNA upstream 572060 17654125 ~ 17655208 (-) True G53286
TU66819 lncRNA upstream 1002182 18084247 ~ 18084482 (-) True G53411
TU66834 lncRNA upstream 1020657 18102722 ~ 18113638 (-) True G53425
AMCG00008992 mRNA downstream 92252 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008989 mRNA downstream 217254 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008987 mRNA downstream 297656 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008980 mRNA downstream 562112 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 742970 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008994 mRNA upstream 123025 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 519767 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 533663 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008999 mRNA upstream 573530 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009001 mRNA upstream 642654 17724719 ~ 17741782 (-) True AMCG00009001
TU66472 other downstream 168379 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 467217 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 676552 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 1007743 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1118061 15957667 ~ 15963617 (-) True G52834
TU66702 other upstream 654524 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 786321 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3118682 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3170839 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 5101023 22183088 ~ 22183565 (-) True G54003

Expression Profile