RNA id: TU66528



Basic Information


Item Value
RNA id TU66528
length 606
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G53155
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17109079 ~ 17109684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGTAGAGAGGGGAAACAGActtgactgactggacactatagcacattaacactttaaggaacataagaacataagaaagtttacaaacgagaggaggccattcgagccttcttgctcgtttggtgtccattaataactaagttagCAAAGGATACTATCcactcatttttaaatgttgccaaatttTTAGCATCAActacatcactggggagtttgttccagagtttgttgtgacaactctctgtgtgtagaagtgtctcctgtattccatcttgaatgcattgaagcccaatttccatttgtgtccccgggtgcgtgtatgactgctgatctggaaaattTCCTTGAAtaaagtccccacatagtctcctatgttccagggtgaaaaggttcagttccctcagtctctttACAAATAGGACACTCTCTTCAAACCTGAAAtaaatctggttgctctcctctgaactgcctctacagcagcgatatctttcttgaagtgtggagcccagaactgcacacagtattccagatgaggtctaactagtgcattgtacagtcttaacattactttccttgttctaaattctacacttttgacaatatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66510 lncRNA upstream 57404 17051473 ~ 17051675 (+) True G53139
TU66508 lncRNA upstream 60981 17047014 ~ 17048098 (+) True G53137
TU66502 lncRNA upstream 89115 17019685 ~ 17019964 (+) True G53131
TU66499 lncRNA upstream 99358 17009522 ~ 17009721 (+) True G53128
TU66480 lncRNA upstream 150048 16958513 ~ 16959031 (+) True G53115
TU66530 lncRNA downstream 2432 17112116 ~ 17113008 (+) True G53157
TU66551 lncRNA downstream 201784 17311468 ~ 17311668 (+) True G53176
TU66553 lncRNA downstream 208607 17318291 ~ 17318510 (+) True G53178
TU66555 lncRNA downstream 211286 17320970 ~ 17321222 (+) True G53180
TU66601 lncRNA downstream 417535 17527219 ~ 17527433 (+) True G53223
AMCG00008990 mRNA upstream 266361 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008991 mRNA upstream 310550 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 360686 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 371580 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008985 mRNA upstream 382784 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008993 mRNA downstream 51401 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008995 mRNA downstream 227036 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 313762 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 382797 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 678836 17788520 ~ 17796297 (+) True AMCG00009003
TU66371 other upstream 435537 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 525150 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 746568 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1245425 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 2299793 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 221208 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 619682 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 807982 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1441088 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4058547 21168231 ~ 21168575 (+) True G53911

Expression Profile