RNA id: TU66555


Basic Information

Item Value
RNA id TU66555
length 253
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G53180
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17320970 ~ 17321222 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTagcattgtgtgcaataaatgtgtaattgaggTATTTTGGACCGCGATACCGTGTAAAGAAATCCCTGACACAACTCTCACTGCTGGCTGACCACTCATGATCCAACATATCAATACAGTGGATATAATTAGCAAAGTGGACCCCGTTTTCTTGccgacattcaaaatcaaaaaagacatACCGGTTGTGCGGCAGTTCCTTTTTAACCGGCTGAATAAAGCACTGGTGCTCGGACCCCGGGGTTAAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66553 lncRNA upstream 2460 17318291 ~ 17318510 (+) True G53178
TU66551 lncRNA upstream 9302 17311468 ~ 17311668 (+) True G53176
TU66530 lncRNA upstream 207962 17112116 ~ 17113008 (+) True G53157
TU66528 lncRNA upstream 211286 17109079 ~ 17109684 (+) True G53155
TU66510 lncRNA upstream 269295 17051473 ~ 17051675 (+) True G53139
TU66601 lncRNA downstream 205997 17527219 ~ 17527433 (+) True G53223
TU66603 lncRNA downstream 206256 17527478 ~ 17613616 (+) True G53224
TU66640 lncRNA downstream 305676 17626898 ~ 17628315 (+) True G53254
TU66641 lncRNA downstream 316939 17638161 ~ 17638374 (+) True G53255
TU66678 lncRNA downstream 353392 17674614 ~ 17685760 (+) True G53290
AMCG00008993 mRNA upstream 159429 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008990 mRNA upstream 478252 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008991 mRNA upstream 522441 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 572577 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 583471 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008995 mRNA downstream 15498 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 102224 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 171259 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 467298 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009005 mRNA downstream 498378 17819600 ~ 17829383 (+) True AMCG00009005
TU66371 other upstream 647428 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 737041 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 958459 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1457316 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 2511684 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 9670 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 408144 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 596444 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1229550 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3847009 21168231 ~ 21168575 (+) True G53911

Expression Profile