RNA id: TU66564



Basic Information


Item Value
RNA id TU66564
length 341
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G53188
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17343442 ~ 17343782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCAGATTTCCTCACAGTCagttttacatgtatatattaaccacccctccccctctcccccaggaGCCTGGATCCTGACAGGGGGGCTCAGGGAGGGTATCGGGCACTATGTGGGTGAAGCAGTGAGGGACCATGCCACCGCCAGCTCCAGCTCCCAGGGCATCGCCCAGGTTGTGGCACTGGGCATTGCACCCTGGGGCATGGTGCACAACAGAGAGCAGCTTGTCAGCAAACAGGTATaaacctctctccctcttgtgTATGTCTTTCTCTATCTTCCTCTTcatctccctctgcctctctttatctctctctacCTCCTTAACCCcccttctcttcct

Function


GO: NA

KEGG:

id description
ko00513 Various types of N-glycan biosynthesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66529 lncRNA downstream 233731 17109061 ~ 17109711 (-) True G53156
TU66518 lncRNA downstream 261377 17081678 ~ 17082065 (-) True G53147
TU66513 lncRNA downstream 281891 17060808 ~ 17061551 (-) True G53142
TU66505 lncRNA downstream 302762 17040107 ~ 17040680 (-) True G53134
TU66498 lncRNA downstream 341224 17002010 ~ 17002218 (-) True G53127
TU66673 lncRNA upstream 310343 17654125 ~ 17655208 (-) True G53286
TU66819 lncRNA upstream 740465 18084247 ~ 18084482 (-) True G53411
TU66834 lncRNA upstream 758940 18102722 ~ 18113638 (-) True G53425
TU66837 lncRNA upstream 787698 18131480 ~ 18131785 (-) True G53428
TU66903 lncRNA upstream 963655 18307437 ~ 18307999 (-) True G53478
AMCG00008994 mRNA downstream 123001 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008992 mRNA downstream 354016 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008989 mRNA downstream 479018 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008987 mRNA downstream 559420 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008980 mRNA downstream 823876 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008998 mRNA upstream 258050 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 271946 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008999 mRNA upstream 311813 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009001 mRNA upstream 380937 17724719 ~ 17741782 (-) True AMCG00009001
AMCG00009015 mRNA upstream 807081 18150863 ~ 18151365 (-) True AMCG00009015
TU66472 other downstream 430143 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 728981 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 938316 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 1269507 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1379825 15957667 ~ 15963617 (-) True G52834
TU66702 other upstream 392807 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 524604 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 2856965 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 2909122 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 4839306 22183088 ~ 22183565 (-) True G54003

Expression Profile