RNA id: TU66601



Basic Information


Item Value
RNA id TU66601
length 215
lncRNA type intronic
GC content 0.60
exon number 1
gene id G53223
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17527219 ~ 17527433 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCTCTTTACCACTCTTCCTCCCTCTACACCTCTCTTCTCTCAGCGTCTCCTCCTGCCATACCCGCGGGGGTCAGACACACCCTGTGACTCTTCCTTGCCATTGTGCTGGGCGATGCGGTACAGTGTGTTTGCCAGGTTGTGCAGTTGACAGGTGCCCAACTGGCACCCCCGCCCACCACCCCCAGACTGAGAGCGTCGCCTCCGGGAAAGAGA

Function


GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66555 lncRNA upstream 205997 17320970 ~ 17321222 (+) True G53180
TU66553 lncRNA upstream 208709 17318291 ~ 17318510 (+) True G53178
TU66551 lncRNA upstream 215551 17311468 ~ 17311668 (+) True G53176
TU66530 lncRNA upstream 414211 17112116 ~ 17113008 (+) True G53157
TU66528 lncRNA upstream 417535 17109079 ~ 17109684 (+) True G53155
TU66603 lncRNA downstream 45 17527478 ~ 17613616 (+) True G53224
TU66640 lncRNA downstream 99465 17626898 ~ 17628315 (+) True G53254
TU66641 lncRNA downstream 110728 17638161 ~ 17638374 (+) True G53255
TU66678 lncRNA downstream 147181 17674614 ~ 17685760 (+) True G53290
TU66676 lncRNA downstream 205181 17732614 ~ 17734816 (+) True G53288
AMCG00008996 mRNA upstream 74002 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008995 mRNA upstream 183543 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008993 mRNA upstream 365678 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008990 mRNA upstream 684501 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008991 mRNA upstream 728690 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00009003 mRNA downstream 261087 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009005 mRNA downstream 292167 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009004 mRNA downstream 304510 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009002 mRNA downstream 336376 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009007 mRNA downstream 371645 17899078 ~ 17915696 (+) True AMCG00009007
TU66558 other upstream 187545 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 853677 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 943290 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1164708 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1663565 15856224 ~ 15863654 (+) True AMCG00008960
TU66686 other downstream 201933 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 390233 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1023339 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3640798 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3747178 21274611 ~ 21275354 (+) True G53915

Expression Profile