RNA id: TU66640



Basic Information


Item Value
RNA id TU66640
length 998
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G53254
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17626898 ~ 17628315 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCTGTCGACGCACTAGGATCACGAAACCAGCCGGCATTTTCCGCTGCTGTGGGATGTCTGGGAGttgtactttgtttgtttgtttgtatAGGTtgcctcgatcctgcgctctcctacacccagcacatcaccacgctgacacgcacctgtagattcttcctgagcaacatacgccgaatccgtcccttcctcaccaactactcgactcagctgcttgtccagtcactggtcctctcccgcctggactactgcaactccctcctggccggcctgcctgcaagaACCTGCAAGTGCCTGCaaagctcgtctggtattctctctacCCTGATTTGCatatgctactccactgctccgctccctccactggctcccattaccagcacgcattcagttcaagacattgaccctcaccaaccgttgtctcaaccacactgcaccaagctaccgtcagtccctcgtctccccatacatcccctccagaccagcGCGGTCTTCCGGTGGCAGAAGACTACCTCTGCCTCCTCgtcactctccttcctccagagcccgctccttctcatccctggcccctaattggtggaacgaccttcccaccgaagtcaaaacagcagagtctttgacctccttccggtgcttactcaagacgcatcttttcagacagtacttgtaatattagtccttttaatccccgttagatagcacttcacagcatttcatcatgcttcttgtgttattgattgatttcctccttgctctctttcccgtagcccttgactgtgaccctacatcttgacagcacttacctttttctttccaggatgtatgacgtcacttactgtacttacctgtgtaaattggaagttgtaaaatgttttatattttgaattgctctgtttaatgtaaatttgaatttgtaatgtttgccttgtacttaactgtattcttgcactttgtattgcacttatgttgtaaatcgccctggataagggcatctgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66603 lncRNA upstream 13282 17527478 ~ 17613616 (+) True G53224
TU66601 lncRNA upstream 99465 17527219 ~ 17527433 (+) True G53223
TU66555 lncRNA upstream 305676 17320970 ~ 17321222 (+) True G53180
TU66553 lncRNA upstream 308388 17318291 ~ 17318510 (+) True G53178
TU66551 lncRNA upstream 315230 17311468 ~ 17311668 (+) True G53176
TU66641 lncRNA downstream 9846 17638161 ~ 17638374 (+) True G53255
TU66678 lncRNA downstream 46299 17674614 ~ 17685760 (+) True G53290
TU66676 lncRNA downstream 104299 17732614 ~ 17734816 (+) True G53288
TU66688 lncRNA downstream 108275 17736590 ~ 17736924 (+) True G53299
TU66689 lncRNA downstream 112229 17740544 ~ 17746936 (+) True G53300
AMCG00008997 mRNA upstream 25880 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00008996 mRNA upstream 173681 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008995 mRNA upstream 283222 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008993 mRNA upstream 465357 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008990 mRNA upstream 784180 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00009003 mRNA downstream 160205 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009005 mRNA downstream 191285 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009004 mRNA downstream 203628 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009002 mRNA downstream 235494 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009007 mRNA downstream 270763 17899078 ~ 17915696 (+) True AMCG00009007
TU66558 other upstream 287224 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 953356 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1042969 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1264387 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1763244 15856224 ~ 15863654 (+) True AMCG00008960
TU66686 other downstream 101051 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 289351 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 922457 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3539916 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3646296 21274611 ~ 21275354 (+) True G53915

Expression Profile