RNA id: TU66673


Basic Information

Item Value
RNA id TU66673
length 1084
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G53286
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17654125 ~ 17655208 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggggagtggggggagTAGGGAGTAACGTGAGTTACCGGATCGGCGCAAATAGGTTCCggaacacagacattcaaaacGCGAGAGGACCTGGATCCTGTTCGGGCAGGATCCagcacaaattaagcactggtGCTAATAGAAGCTCCAGAGCATTATGACGGGTAGAGGATCCTGGGACCCTGGACAACTCTGTTCACACTGAACACCCTAGctgaaatgtggaaataaatatttgtgtattatctatttttaataatttgtgtcTTTCTGACTTGGTGCAAATCCAGAATAAAAAACTTTGCCTGGAAAAAACCAAGACAAAGACAATATTCTAGGGACTAGTATTCAGTCTATCTAAAGTACCATTTCTATGAGGGTGATCAATACACATTAGGGCCGGAGAAAGACATTCGTACTGCGGCCTATGGAGCTCCtgattttttcagataactCCGTTTCTTTTCTCAAACTAGTTTCTCTGAGATGAGTTCGCAGtaattaagacaaaaataaataataatgtaagtgGCCAGAAAGAGTCTGAATTGGATGTGACGATATGATGTCACAGTCATAGCATTTCATACACCGCAGACATGACATTTTATACATAGTGAAGTTATTATTCTCGTTTGTGCACCGAAATGTCAACgcatctcctcctacagttttGCACTGATCCACACCAAACTTGGCCGTCTGCAGGCGCTATGTCCCGAATAGTATGCTATTGTTTTTATAGTGGCTGTGTAGTCTACTTTTGGACCTACGTGCCATAtgttgtgaaagtgaaagtagtATATAACTCTCTAACGGCTGTACATACAGTCATAGTACTTATTGAATGCTTATAGGAAACCTTATGTGCTCTATCAGAATAAACCACTCACCATGACCTGTGACCTTCCTGGACTGAGATACAGCATCTAGGATCTGATGCAAGTGTCATCAgatattgaacatctcattacGTCTTCTAGTATGCTTTAATGGCCAAACATACTATTGAACACTAATACGAACTCCTGTATGAAGTTTCCAAAAATGCTATCGGTTTTCTGCTCAGAGCTATGGATCATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66564 lncRNA downstream 310343 17343442 ~ 17343782 (-) True G53188
TU66529 lncRNA downstream 544414 17109061 ~ 17109711 (-) True G53156
TU66518 lncRNA downstream 572060 17081678 ~ 17082065 (-) True G53147
TU66513 lncRNA downstream 592574 17060808 ~ 17061551 (-) True G53142
TU66505 lncRNA downstream 613445 17040107 ~ 17040680 (-) True G53134
TU66819 lncRNA upstream 429039 18084247 ~ 18084482 (-) True G53411
TU66834 lncRNA upstream 447514 18102722 ~ 18113638 (-) True G53425
TU66837 lncRNA upstream 476272 18131480 ~ 18131785 (-) True G53428
TU66903 lncRNA upstream 652229 18307437 ~ 18307999 (-) True G53478
TU66975 lncRNA upstream 946505 18601713 ~ 18601951 (-) True G53543
AMCG00009000 mRNA downstream 27342 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008998 mRNA downstream 42767 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00008994 mRNA downstream 433684 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008992 mRNA downstream 664699 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008989 mRNA downstream 789701 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008999 mRNA upstream 387 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009001 mRNA upstream 69511 17724719 ~ 17741782 (-) True AMCG00009001
AMCG00009015 mRNA upstream 495655 18150863 ~ 18151365 (-) True AMCG00009015
AMCG00009012 mRNA upstream 520687 18175895 ~ 18208537 (-) True AMCG00009012
AMCG00009013 mRNA upstream 568639 18223847 ~ 18253002 (-) True AMCG00009013
TU66472 other downstream 740826 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 1039664 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 1248999 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 1580190 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1690508 15957667 ~ 15963617 (-) True G52834
TU66702 other upstream 81381 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 213178 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 2545539 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 2597696 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 4527880 22183088 ~ 22183565 (-) True G54003

Expression Profile