RNA id: TU66676


Basic Information

Item Value
RNA id TU66676
length 501
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G53288
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17732614 ~ 17734816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTCCTGAAGAAGCTGGACAGTGCATACTCAGTGGACAAGGGCAACAGGATCAAGCTGACTGTGGAGTTGTCCGACCCTGACGCCCAAATCAAGTGGCTCAAGAATGGCCAGGAGATCAAACCCTCCGCCAAgtacaTCTTTGAGAATGTGGGTCTGAAGCGCATTCTGACCATTAACAAGTGCACACTGGCGGACGATGCAGCTTATGAGTGCATCGTCGGAGAGGACAAGTGCTTCACTGAGGTGTTTGTGAaggaGCCCCCTGTACTGATCACCCAGTTGCTAGATGACCAGCACGTTGTTGTGGGTGACAGAGTGGAGTTTGAGGTGGAGGTGTCAGAAGAGGGAGCCCATGTCAAATGGTGAGGagtcccccctccctctctctctctctccttttctccaacccttttctttctccttccctctttctctcactctcttgcATGGCCACAGCCAGTGAAAATTTGCCCAAGGTCAGCCTAACACTCAACTCAC

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66678 lncRNA upstream 46854 17674614 ~ 17685760 (+) True G53290
TU66641 lncRNA upstream 94240 17638161 ~ 17638374 (+) True G53255
TU66640 lncRNA upstream 104299 17626898 ~ 17628315 (+) True G53254
TU66603 lncRNA upstream 118998 17527478 ~ 17613616 (+) True G53224
TU66601 lncRNA upstream 205181 17527219 ~ 17527433 (+) True G53223
TU66688 lncRNA downstream 1774 17736590 ~ 17736924 (+) True G53299
TU66689 lncRNA downstream 5728 17740544 ~ 17746936 (+) True G53300
TU66748 lncRNA downstream 134180 17868996 ~ 17870467 (+) True G53352
TU66750 lncRNA downstream 135691 17870507 ~ 17871066 (+) True G53354
TU66749 lncRNA downstream 136613 17871429 ~ 17872667 (+) True G53353
AMCG00008997 mRNA upstream 131596 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00008996 mRNA upstream 279397 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008995 mRNA upstream 388938 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008993 mRNA upstream 571073 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008990 mRNA upstream 889896 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00009003 mRNA downstream 53704 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009005 mRNA downstream 84784 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009004 mRNA downstream 97127 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009002 mRNA downstream 128993 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009007 mRNA downstream 164262 17899078 ~ 17915696 (+) True AMCG00009007
TU66686 other upstream 1954 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 392940 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1059072 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1148685 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1370103 16362102 ~ 16362511 (+) True G52942
TU66780 other downstream 182850 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 815956 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3433415 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3539795 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3557425 21292241 ~ 21293901 (+) True G53917

Expression Profile