RNA id: TU66748


Basic Information

Item Value
RNA id TU66748
length 1444
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G53352
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17868996 ~ 17870467 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGccacctcctcctctgcctcctctctggCCGCCTCTGCTCTCACTTCCTGTCCAAACCCTGCCACTTCCTCCGGCCTGGGCCAATCACAGCAGCAGCCCTCCCTCTCTGGCCCTCTGTCTCCCcctacctcctcctcctccctcactcTTGCCAACAGCAGCCACACCTCCTCTCTCGCACCTCCCTCTTCCTCCGCTAAtgcctctgcctcctcctccgcccctctgcctctcccccttCCTCTGCCCCTCCCTCCCATGGGCCTGCACTCCTCCCTGAAGGGGCTCATGAGCCACAGTCACAAGCAGGGCATCGAGCCCCTGCTGTTCAGGAGTGGCTCCAAGGAGAATGTGCAAGAGACGcaaatatgagagagagagagaggggaaaggaaggattggagggagagggagagagggagacgagAGACACCAAACAGAAAATGGATTGCGGATTGCCGGcctggatagagagagagagagagagagagacagagagagagacagagtggccaatttaatttttatttgattttatctttttattttgtgtgctttttgttgctttctgtctctcccccctcccaccTTCCTCTATCGCTAtctctgtctctctctgatacactgactgacactgacttgactgatacactgactgactggacatcACAGTACAATACcactgtacagagagagagagagacagactgcaGTACCAAAGGAAATATTACACCATCATATCATATCAGAAGcaaacaggaggaggaggaagaaggtaaagatacagtacagtacagacacacatagtacagtacagacacacatggtacagacacacagtacgGTACAGACATACACAGTACAATGTTAACTCTTGACCTGtgcacccctctctctctctctgtgtgaagtggGCATTTCTCTGAAGAGGGGGAAGAGGGGGGAGttgtccagcagcagcaggagcgaCCAACAAACAAGAATGAGATAGAGACAAATttccagaagaaaaataattaaaaaaactaaacgagaaaaaagggaaaaaaacaataaaggggggaattaaaaaaaaatctgaaagaagTGAGAAGAAGAGAGCATCAAAATGACGGATGGAATTGTGAAGAATGGACAGCAgaggggacagagggacaggaTGGAGGGACAGCCCAGTGGAATTTCACGGCGGACCTGATtctaaatataatctatttttgtTGTGGGGGAGAGTGGGGGACAGCTGCCTACTGCAGACATTGAAATCTATTGTACAGACTCTGCGTTCCGGGGCCCAGTGCTTGGCAGCCCCGTCCACTGAGACAAACTTTCTAACTGTCATTTCTGAAGAGAACTGATTGttgtcattttcttcttttttgtttcgcTTTGCGCCAATCGATTGATTTTAATTGCGGGCTTGGGGGGGACCTTGTTGATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66689 lncRNA upstream 122060 17740544 ~ 17746936 (+) True G53300
TU66688 lncRNA upstream 132072 17736590 ~ 17736924 (+) True G53299
TU66676 lncRNA upstream 134180 17732614 ~ 17734816 (+) True G53288
TU66678 lncRNA upstream 183236 17674614 ~ 17685760 (+) True G53290
TU66641 lncRNA upstream 230622 17638161 ~ 17638374 (+) True G53255
TU66750 lncRNA downstream 40 17870507 ~ 17871066 (+) True G53354
TU66749 lncRNA downstream 962 17871429 ~ 17872667 (+) True G53353
TU66754 lncRNA downstream 2335 17872802 ~ 17874655 (+) True G53358
TU66762 lncRNA downstream 14014 17884481 ~ 17884687 (+) True G53366
TU66814 lncRNA downstream 207204 18077671 ~ 18077878 (+) True G53406
AMCG00009002 mRNA upstream 38 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009004 mRNA upstream 23328 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009005 mRNA upstream 39613 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009003 mRNA upstream 72699 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00008997 mRNA upstream 267978 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009007 mRNA downstream 28611 17899078 ~ 17915696 (+) True AMCG00009007
AMCG00009009 mRNA downstream 47081 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009010 mRNA downstream 105567 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009008 mRNA downstream 143239 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009006 mRNA downstream 166327 18036794 ~ 18040961 (+) True AMCG00009006
TU66686 other upstream 138336 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 529322 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1195454 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1285067 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1506485 16362102 ~ 16362511 (+) True G52942
TU66780 other downstream 47199 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 680305 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3297764 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3404144 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3421774 21292241 ~ 21293901 (+) True G53917

Expression Profile