RNA id: TU66754


Basic Information

Item Value
RNA id TU66754
length 1854
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G53358
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17872802 ~ 17874655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGATGGAAATGTGCCAAATGTGCAGAGTGCCAAACTGCAGTGACAGGACTCTacagaataaacacaatcttgttgttttgtacaaaatacatgtaacacacaatgcctctgtgtgtgtgtgtgtgtgtgtgtgtgaatgagagtgtatgtatatgagtgtctgtgtgtgtgtgagggaggtGTCAGTACGTATGTTTGTGTGTCAATCAATCggtccatttatttttagttttagttcactttatttggttttgtaagAATCATTTGAGAGTTTTTGACATGTGTTTGGCAACAGTGCTAGtgatcagacagacagacaaacagagaccACAGAATgacacagaggaagagagacacacagaccacaTACTGACACAGACAGCCAGACAGAGAGACAACTAGACAGAGCCCACAGactgacacaaacagacagacctAGAGAAAGAGATACAcaagacagatagacagagaccacagactgacacagagacagacacagaatgACACTGATAGAGTGAGACACAAACAGACTGACACAATgacagaaagaaacacaataattaacattaacaacaaacagacaaatacagagggactcacaaacacacacagatagacacacagagagacacagatacacacagagagaatcacacacagacagacacagacactagAGAGCGAgttattaatgattattttttacatcTGAAAGGTCAATTCTTGCAGATGGATGGAATCTCAatacctctctccctctttccctctctctctgcagtagAACAGGAAAACAAGGCTGATTAAGGAGTAACCTTGGTGACGATGAACATCTCAGCCATCCCATAATAACCTCAGGCtccactacacacacatacatacacatctCACACATCTCTCTATCTCCTTCTGAATCTGAGTGTCTAAAATTTACATAGAATAGAAAATTGTGCTTGTGTACTTACTACAgatagtcagtcagtgtgtcagtcagtcagtgtatcagtcacaCCGACTGCCGACTGCCTTGTCAGTCATTTACTgtagaaatactgtactgtaggcAGACACTGTAGAGACACTAGAGACACTATAGGCACTGTAGAGACACTAGACAGAGACATCTTTGCTTAATGAACGAGGGGATGGAGAGACAGAAGAGACAGCAGCTCACAGAGATCGATGGATGCCTATTAAAAGAACAGATCTTTTTGCTtgtgggcagagagagggaaggtgggggggagagggggacagaggaATAAATATTCAGTCAGAGAGCACTGAGGGTGCATTAGTATTATTCAcacattcctctctctccctctctctctttctgtctccccTCCCCTGTTCTCCCCCTCCCCGCTCTTTCTCTCTAGCGCTGCAGCGTTACCATGGTGACAAAGATGTCTGGGAATACCTCTGTCCttcagagagagcgagaaagagggagggggttCAATACAGTACACACTCACGCTCTGACTGagcgactgactgactgactggacactacggTACAACAGccactgagggagagggagagggtgaagAGGGAAGGAAAGTAGGAATCCTTATCTATCTATCAGTCTGTTTATCTCTGTGTGTCCTAATCTGTtaatctcaaaataaaatatatcactcTATCTTAATCTATATAAGCATCTCtcgccctccctccctctctccctctctccctgttgCATGCATCTCCATTTTTGCAGACTAGGCtgttgtttccatgacaacctGTAGCCGAAAATagcccccctttctctctcccaccctcCTTCTTCTCTAGgtttctccctcctctctccatcatttcctctttccccccctctctcttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66749 lncRNA upstream 135 17871429 ~ 17872667 (+) True G53353
TU66750 lncRNA upstream 1736 17870507 ~ 17871066 (+) True G53354
TU66748 lncRNA upstream 2335 17868996 ~ 17870467 (+) True G53352
TU66689 lncRNA upstream 125866 17740544 ~ 17746936 (+) True G53300
TU66688 lncRNA upstream 135878 17736590 ~ 17736924 (+) True G53299
TU66762 lncRNA downstream 9826 17884481 ~ 17884687 (+) True G53366
TU66814 lncRNA downstream 203016 18077671 ~ 18077878 (+) True G53406
TU66817 lncRNA downstream 209149 18083804 ~ 18084038 (+) True G53409
TU66818 lncRNA downstream 209663 18084318 ~ 18084530 (+) True G53410
TU66822 lncRNA downstream 221575 18096230 ~ 18098551 (+) True G53414
AMCG00009002 mRNA upstream 3844 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009004 mRNA upstream 27134 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009005 mRNA upstream 43419 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009003 mRNA upstream 76505 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00008997 mRNA upstream 271784 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009007 mRNA downstream 24423 17899078 ~ 17915696 (+) True AMCG00009007
AMCG00009009 mRNA downstream 42893 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009010 mRNA downstream 101379 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009008 mRNA downstream 139051 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009006 mRNA downstream 162139 18036794 ~ 18040961 (+) True AMCG00009006
TU66686 other upstream 142142 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 533128 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1199260 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1288873 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1510291 16362102 ~ 16362511 (+) True G52942
TU66780 other downstream 43011 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 676117 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3293576 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3399956 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3417586 21292241 ~ 21293901 (+) True G53917

Expression Profile