RNA id: TU66823



Basic Information


Item Value
RNA id TU66823
length 632
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G53415
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18099016 ~ 18099647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gttttgatgaatgcaatagttatttttgaactataaaatattgcttttgagcattattccaatatttatgtttacacttgtttcattatttaatattgtatgccatttttgagctttttgcttattgtaggctatatagttatttatgttttgactgcagtgtgtgcgtttagaaaaaagtgatttcttcttgcattagaatgtaagtttcatctgtattcatgttttgatgtaggtgtattaattaaggttgtggcccgtgaatacatttgtgaacactcgaatggcccttgataggaagAAGGTTCCCCACCTCTGAATTATTGAAAAAGTAAGGTAAATCTTTATCTCTTGCAACTGATTCAAAGTCTTTGTAATATGCATGTTGTCACACTTTTGGTATGTAATAGAGTAATTGCCTAGACATAGAGCCGGGAGAGAGAATGTCACAGAAGAGTATGTAAGAGTACCTTTAAGAAATATCACCATGTTTAGGGGAATGGCATTTGCAACGGTGTAAAATTCCTTAGGATGACATACGAATCAGAAGTAATTGTAGTTCAGAACATTACCATGGCTGTCTATCATATccaataaagacaaaatattatatcagttttcataaaataaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66822 lncRNA upstream 465 18096230 ~ 18098551 (+) True G53414
TU66818 lncRNA upstream 14486 18084318 ~ 18084530 (+) True G53410
TU66817 lncRNA upstream 14978 18083804 ~ 18084038 (+) True G53409
TU66814 lncRNA upstream 21138 18077671 ~ 18077878 (+) True G53406
TU66762 lncRNA upstream 214329 17884481 ~ 17884687 (+) True G53366
TU66863 lncRNA downstream 259776 18359423 ~ 18398807 (+) True G53451
TU66872 lncRNA downstream 288752 18388399 ~ 18389424 (+) True G53454
TU66874 lncRNA downstream 299715 18399362 ~ 18400842 (+) True G53456
TU66878 lncRNA downstream 301858 18401505 ~ 18402219 (+) True G53458
TU66921 lncRNA downstream 309279 18408926 ~ 18410130 (+) True G53493
AMCG00009006 mRNA upstream 58055 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 76697 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 94275 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009009 mRNA upstream 178424 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009007 mRNA upstream 183320 17899078 ~ 17915696 (+) True AMCG00009007
AMCG00009014 mRNA downstream 119425 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009016 mRNA downstream 261879 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009022 mRNA downstream 1444717 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1761631 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1839429 19939076 ~ 19949435 (+) True AMCG00009025
TU66780 other upstream 178963 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 368356 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 759342 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1425474 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1515087 16579863 ~ 16583929 (+) False AMCG00008983
TU66948 other downstream 451125 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3068584 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3174964 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3192594 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5783670 23883317 ~ 23975906 (+) True G54263

Expression Profile