RNA id: TU66863



Basic Information


Item Value
RNA id TU66863
length 875
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G53451
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18359423 ~ 18398807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaattggattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatctccaagcagcttggtgagaaggtgacaacagttggtgtgattattcgcaaatggaagaagtCTCCCTTGGTCTgaggctccatgcaagatctcacctcgtggagttacaatgatcatgagaacggtgcagaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaagGggcccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaacatctgaatgattcagaggagaactaggtaaaagtgttgtggtcagataagaccaaaatcgagctctttggcatcaactcaactcgccgtgttcggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaagtggacaggacaactgcaccgcatcaaagggacaatggatggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcaaattatagactgatcatttctttgtcattgaacaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66823 lncRNA upstream 259776 18099016 ~ 18099647 (+) True G53415
TU66822 lncRNA upstream 260872 18096230 ~ 18098551 (+) True G53414
TU66818 lncRNA upstream 274893 18084318 ~ 18084530 (+) True G53410
TU66817 lncRNA upstream 275385 18083804 ~ 18084038 (+) True G53409
TU66814 lncRNA upstream 281545 18077671 ~ 18077878 (+) True G53406
TU66874 lncRNA downstream 555 18399362 ~ 18400842 (+) True G53456
TU66878 lncRNA downstream 2698 18401505 ~ 18402219 (+) True G53458
TU66921 lncRNA downstream 10119 18408926 ~ 18410130 (+) True G53493
TU66923 lncRNA downstream 22045 18420852 ~ 18472277 (+) True G53495
TU66924 lncRNA downstream 28858 18427665 ~ 18429953 (+) True G53496
AMCG00009014 mRNA upstream 139170 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 318462 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 337104 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 354682 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009009 mRNA upstream 438831 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009022 mRNA downstream 1145557 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1462471 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1540269 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 1864268 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 1977988 20376795 ~ 20394819 (+) False AMCG00009033
TU66780 other upstream 439370 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 628763 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 1019749 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1685881 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1775494 16579863 ~ 16583929 (+) False AMCG00008983
TU66948 other downstream 151965 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 2769424 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 2875804 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 2893434 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5484510 23883317 ~ 23975906 (+) True G54263

Expression Profile