RNA id: TU66872



Basic Information


Item Value
RNA id TU66872
length 992
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G53454
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18388399 ~ 18389424 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTACTTCTTACATTTAAACTTAAGATTTGTATATCCCTGTAACAATGGTAATTATTTTAGTAGGCCTGGATATgaattttaagtttaatttctaaatatttgttatgtattggttttgaaaagttaaaatttaaatcaaggtgaaaatacagtttttcaaatacagtgGATATTGTATAATGGTTTGCCGTTTACAAGATCAATATGAATGAACCTCTCATTTGTTTATGCCACAGAATGGACGCGTTAACCGAAACAGTAGTTTGGGAAATGGCAGCTACGGGTGACATTATCGGTGAAAAGGACATTGTGTCTATGAATGTCCAAACATTCAAATATGGAAATTCAGTCACTGCACGCTAGAAAGCAAACATACGCTGCCTTAGTGTTATTTAGATCAGGTACGTAGGACCTCTGTATTTCTATTTATgcttaacttttttaaatgttcactgcTTGGATAAAGACGTCTGATGATGATCATCATTATAAATGTTGTCCCAAATCATGTTACCCGGCAGTATTTAGCAAGATATAGGTGCTAGAAATAACATCACTGCCAAATAGTGTCACCAGCAATATATATAACGGTGATCCATTTTCCTTAATGGTCCTAGgccgggattaaatcaaaacactaatagaaaactacagaactgtactcagttgtggctgcattttccagaagatgccactttctcctAATCAGAAAGGtcactgctatgatgtacaggtgtgtagtGTGCTAtgagcaggtgggtcaaagttttgatttaatccggcctcTAGTCTGCTGCTTCTTTTTctgcaatatttgtttaaactgtaCCTTTCACTGTTGTAGTATTAGGAGTATATTTGTGATACAAGTATGGTCTGCAATGCTAGtctgtattattgtttacataattagtgaaaaatgtattatcattCCATAGGTTCAGTGGAGGAGGTGTTACACCAGCTAGCAGAtcttgaagatttatttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66823 lncRNA upstream 288752 18099016 ~ 18099647 (+) True G53415
TU66822 lncRNA upstream 289848 18096230 ~ 18098551 (+) True G53414
TU66818 lncRNA upstream 303869 18084318 ~ 18084530 (+) True G53410
TU66817 lncRNA upstream 304361 18083804 ~ 18084038 (+) True G53409
TU66814 lncRNA upstream 310521 18077671 ~ 18077878 (+) True G53406
TU66874 lncRNA downstream 9938 18399362 ~ 18400842 (+) True G53456
TU66878 lncRNA downstream 12081 18401505 ~ 18402219 (+) True G53458
TU66921 lncRNA downstream 19502 18408926 ~ 18410130 (+) True G53493
TU66923 lncRNA downstream 31428 18420852 ~ 18472277 (+) True G53495
TU66924 lncRNA downstream 38241 18427665 ~ 18429953 (+) True G53496
AMCG00009016 mRNA upstream 14131 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 168146 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 347438 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 366080 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 383658 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009022 mRNA downstream 1154940 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1471854 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1549652 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 1873651 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 1987371 20376795 ~ 20394819 (+) False AMCG00009033
TU66780 other upstream 468346 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 657739 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 1048725 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1714857 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1804470 16579863 ~ 16583929 (+) False AMCG00008983
TU66948 other downstream 161348 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 2778807 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 2885187 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 2902817 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5493893 23883317 ~ 23975906 (+) True G54263

Expression Profile