RNA id: TU66874


Basic Information

Item Value
RNA id TU66874
length 1458
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G53456
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18399362 ~ 18400842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCTTAAAACAGTCTTCACCAAACTTGGATCACTCAAAATGTACAGAAGTTAACAAAACATTCCAATGTCTAGATAATTCCTGAGAGGAGGTAGTAAAAGTATTGAAACACAAACGGGTACCAgtcaatacaatttaaagcaCCACTCACTTGGATGTTTGTGCTTAATTTTTGGAAAATTTCATAGATTTGATCCTTGAACCCCCGACTCAACATTTCATCAGCCTCATCCAAAACAAACATCTTGATCCACTTTGGAGCTGTTCAAAGACAACAGAAGTTAAGTTGCAAGGTCACATGCATGTGGAAAATGTACAGcacatgtgcatgtgtgcacaGTCTACTGTGATCAGAGCTAAACTAAAGGGATTCTTCATTACTTAAAGTCTCAAAAAGATGATGCACCACCACTTTAACTTGAAGGTAGGGCTGTGCCGGTGACAGATTTTTGGCATCGATGTACCTTTGAAGAATTTACCACAGTGTTAAGTATTACGatcactgggggggggggactttgTTCCACTATTCTGAAGTAGGATAgtttttagattcaaataaatatttaaaaactatgtaACTTAATGTTTGAGTTGTTTAAGTGTTACAAACACATGCTTTCAGTTGTGTTTGGCGGTTCTGTGACAAAAATACTGACTTTAAACGATAATGGCATCGTAGCTACAGCgattcagaaataaaacctgGTCGCTTATGGTCTCATTTGATTTAGGTAGAATATTTAATGTCCTTCAACGATTCCAAAATGGTCTTTAAATCCTAGTTAGTTTTCAAcactttaatttcacccctTTTTAACTCCAGCTACAAGGCCGTAAACAGGCTTCCAACAGAAAGCCACCAATTGCGAGGCATCACTCCGTCAGCGTGTTTACATGGGGTGCGTTCACGTCACGCAGACTCATCATTCTTGCCAATGAATGCTCACACTTCCAAcggattctgtgcagaatgatcAAAGCATGCTTGTCAAACACAGGTAGCTCTAAAGTATTCAAAACATCAATGCGTGATATTTAACACTTAAAAGAAACTGATCTGCCTAGGAGGGGGCGAGTATTTGTAGAGTGGGAGGGGGGTGTGCCTGCATGTAGCTTAGTTTgtccaaaatgtaaaaatatcatGCAACGCTTGAGGTGGAGTCTCAATGCAAGAGACCCGCACACAATGCGTGACTTCAGAGctatgtatacaaacacacacctcctaTCCATGAGCACTTGCTCATGAAACAGCCACGATGGGGATTTCAACCACTTTACCACACCAGTGCAGTGACCTTACCACATCACAAATCTGGGAGGCTTCAGAATTGCTATCGTTTTGACAATTTTTATTTCCACCATAGTGAGGAGGTACTCTATTTACCAGCACAGCCCTACTTggaggagggagaaagagaggggggggaaaaaaaaaaaaaaaaaaaaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66863 lncRNA upstream 555 18359423 ~ 18398807 (+) True G53451
TU66872 lncRNA upstream 9938 18388399 ~ 18389424 (+) True G53454
TU66823 lncRNA upstream 299715 18099016 ~ 18099647 (+) True G53415
TU66822 lncRNA upstream 300811 18096230 ~ 18098551 (+) True G53414
TU66818 lncRNA upstream 314832 18084318 ~ 18084530 (+) True G53410
TU66878 lncRNA downstream 663 18401505 ~ 18402219 (+) True G53458
TU66921 lncRNA downstream 8084 18408926 ~ 18410130 (+) True G53493
TU66923 lncRNA downstream 20010 18420852 ~ 18472277 (+) True G53495
TU66924 lncRNA downstream 26823 18427665 ~ 18429953 (+) True G53496
TU66945 lncRNA downstream 127501 18528343 ~ 18536374 (+) True G53517
AMCG00009016 mRNA upstream 25094 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 179109 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 358401 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 377043 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 394621 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009022 mRNA downstream 1143522 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1460436 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1538234 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 1862233 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 1975953 20376795 ~ 20394819 (+) False AMCG00009033
TU66780 other upstream 479309 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 668702 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 1059688 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1725820 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1815433 16579863 ~ 16583929 (+) False AMCG00008983
TU66948 other downstream 149930 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 2767389 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 2873769 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 2891399 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5482475 23883317 ~ 23975906 (+) True G54263

Expression Profile