RNA id: TU66903


Basic Information

Item Value
RNA id TU66903
length 527
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G53478
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18307437 ~ 18307999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtagcgttatgttgggtgtattttgataagagcatttgggctctgagctgaagcactgatctaaagaactttggggggggagaggtcttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggacgagagccagcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaactCAGGAACCAATCActtattgatctgacagactataaggaacagcggacagtctttctctctctctctctctctcacctgaaccagtaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaactaagtctttgccggcaacagaagagttaaactgggagaaggag

Function

GO:

id name namespace
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66837 lncRNA downstream 175652 18131480 ~ 18131785 (-) True G53428
TU66834 lncRNA downstream 193799 18102722 ~ 18113638 (-) True G53425
TU66819 lncRNA downstream 222955 18084247 ~ 18084482 (-) True G53411
TU66673 lncRNA downstream 652229 17654125 ~ 17655208 (-) True G53286
TU66564 lncRNA downstream 963655 17343442 ~ 17343782 (-) True G53188
TU66975 lncRNA upstream 293714 18601713 ~ 18601951 (-) True G53543
TU66988 lncRNA upstream 351352 18659351 ~ 18659633 (-) True G53556
TU67000 lncRNA upstream 414111 18722110 ~ 18722374 (-) True G53568
TU67009 lncRNA upstream 527137 18835136 ~ 18835373 (-) True G53577
TU67050 lncRNA upstream 818743 19126742 ~ 19127019 (-) True G53613
AMCG00009011 mRNA downstream 19265 18272618 ~ 18288172 (-) True AMCG00009011
AMCG00009013 mRNA downstream 54435 18223847 ~ 18253002 (-) True AMCG00009013
AMCG00009012 mRNA downstream 98900 18175895 ~ 18208537 (-) True AMCG00009012
AMCG00009015 mRNA downstream 156072 18150863 ~ 18151365 (-) True AMCG00009015
AMCG00009001 mRNA downstream 565655 17724719 ~ 17741782 (-) True AMCG00009001
AMCG00009018 mRNA upstream 69435 18377434 ~ 18382391 (-) True AMCG00009018
AMCG00009019 mRNA upstream 88178 18396177 ~ 18402246 (-) True AMCG00009019
AMCG00009017 mRNA upstream 96515 18404514 ~ 18410122 (-) True AMCG00009017
AMCG00009020 mRNA upstream 164635 18472634 ~ 18473701 (-) True AMCG00009020
AMCG00009021 mRNA upstream 952288 19260287 ~ 19261111 (-) True AMCG00009021
TU66751 other downstream 438741 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 560394 17736589 ~ 17747043 (-) False AMCG00009001
TU66472 other downstream 1394138 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 1692976 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 1902311 16404710 ~ 16405126 (-) True G52951
TU67292 other upstream 1892748 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 1944905 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 3875089 22183088 ~ 22183565 (-) True G54003
TU68185 other upstream 6845267 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 6865678 25173677 ~ 25176378 (-) True AMCG00009100

Expression Profile