RNA id: TU66921



Basic Information


Item Value
RNA id TU66921
length 382
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G53493
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18408926 ~ 18410130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACCAGCCTACTGTTGGCCACATAGTTGCATTctttccaatgttttttttgcccTGCAGGACAGTCAGATGGTTTGACTGAAAAGGTCAGGGAGTACTCCTTGTCCAAGTCATTGGTACACTCCAGGCCTCATTGATCTGGTACAGGACAAAGTGATTGGAGTGCTGCAGCTGCTGGTTGTACTCAAGTATGGCCAGATCTACAGCTGCCTCCACATCTTTGTCATCGCAAAAGACCTGCACCTTGTCAGCCCCAGCTGCAGAGAGGCACAGCTTGGGGGAGAGAAGAAGCAGGGATAGCAGCCTGAGACTCAGCATGTCCACACAAATACAGGACCAACAGGGATCTACAGCAGACTGCACAGAGCCCCTGTGCACAGCAG

Function


GO:

id name namespace
GO:0050662 obsolete coenzyme binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66878 lncRNA upstream 6707 18401505 ~ 18402219 (+) True G53458
TU66874 lncRNA upstream 8084 18399362 ~ 18400842 (+) True G53456
TU66863 lncRNA upstream 10119 18359423 ~ 18398807 (+) True G53451
TU66872 lncRNA upstream 19502 18388399 ~ 18389424 (+) True G53454
TU66823 lncRNA upstream 309279 18099016 ~ 18099647 (+) True G53415
TU66923 lncRNA downstream 10722 18420852 ~ 18472277 (+) True G53495
TU66924 lncRNA downstream 17535 18427665 ~ 18429953 (+) True G53496
TU66945 lncRNA downstream 118213 18528343 ~ 18536374 (+) True G53517
TU66947 lncRNA downstream 144829 18554959 ~ 18584509 (+) True G53519
TU66952 lncRNA downstream 182922 18593052 ~ 18593516 (+) True G53524
AMCG00009016 mRNA upstream 34658 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 188673 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 367965 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 386607 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 404185 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009022 mRNA downstream 1134234 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1451148 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1528946 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 1852945 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 1966665 20376795 ~ 20394819 (+) False AMCG00009033
TU66780 other upstream 488873 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 678266 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 1069252 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1735384 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1824997 16579863 ~ 16583929 (+) False AMCG00008983
TU66948 other downstream 140642 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 2758101 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 2864481 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 2882111 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5473187 23883317 ~ 23975906 (+) True G54263

Expression Profile