RNA id: TU66947



Basic Information


Item Value
RNA id TU66947
length 779
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G53519
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18554959 ~ 18584509 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCTCCTTCCTCTGCTCCCAAGTCCCACCCCCGGCCCATCTCCTTGGCCAAGCCCTACGCCTGCACCCTCTGTAGCAAGAGCTTCAGCAAGCCTAGTGAGCTGGGCCGACACCAACGCATCCACACGGGGGAGAAGCCCTTCGCCTGCCCCCTGTGCCCCCGCCGCTTCACTGATGCCTCCAACGTCAAGGTCCATGCCCGTGTCCACACAGttacTCCAATTTGGGGATCCCAGATAACGAACGCATCCCTGAGAAGATCTAATGCTCCAGAATACCTCTGTGACGAGGCTGGTGCAACGATTTCAAGctCTGGAAGCACTGATAAACACTCCACCATGAACTGAAACTACTGGGGAATCAAGGAGGAGATCAGACTCGTATGACCGTGGAGTACCAAGtggatgaaaatgtaattgccagggaatgaaaaatgattgaaaatggaATCGACTCAAGTGGCTTTGGAATGCTTATAAACtaaatttaagaatatataatctaaatatgaaattataaatattcattttcttgtttttgtttttatcattaatataaaaaatacatgtatacataacTACACAATCCttacttttatatttgttatttttccactttaaaCCAACTTGCTCTAGGACCAGACGTgatcacattttacaaaactttaattaaatagccttttgtttttgtatgattaggagaaataaatacaatgttgtgAAGTGTGATAGGGGTgttgtcaaagttttgatcagGTGCTGCCCAGAgcctatacaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66945 lncRNA upstream 18585 18528343 ~ 18536374 (+) True G53517
TU66923 lncRNA upstream 82682 18420852 ~ 18472277 (+) True G53495
TU66924 lncRNA upstream 125006 18427665 ~ 18429953 (+) True G53496
TU66921 lncRNA upstream 144829 18408926 ~ 18410130 (+) True G53493
TU66878 lncRNA upstream 152740 18401505 ~ 18402219 (+) True G53458
TU66952 lncRNA downstream 8543 18593052 ~ 18593516 (+) True G53524
TU66974 lncRNA downstream 17220 18601729 ~ 18601952 (+) True G53542
TU66999 lncRNA downstream 137599 18722108 ~ 18722401 (+) True G53567
TU67004 lncRNA downstream 198639 18783148 ~ 18783749 (+) True G53572
TU67014 lncRNA downstream 343228 18927737 ~ 18928175 (+) True G53581
AMCG00009016 mRNA upstream 180691 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 334706 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 513998 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 532640 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 550218 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009022 mRNA downstream 959855 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009026 mRNA downstream 1276769 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 1354567 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 1678566 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 1792286 20376795 ~ 20394819 (+) False AMCG00009033
TU66948 other upstream 999 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 634906 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 824299 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 1215285 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1881417 16672503 ~ 16673542 (+) True G53028
TU67402 other downstream 2583722 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 2690102 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 2707732 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5298808 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 6228109 24812618 ~ 24816534 (+) True AMCG00009085

Expression Profile