RNA id: TU67113



Basic Information


Item Value
RNA id TU67113
length 588
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G53663
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19577320 ~ 19577907 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaatagaactttaatcaagcaggctcggaagccccacgtcaggaataattccttcagtgaggacttaatgtttacaaacatgagtgcagctttataggaaaatgacgtaacatcttatggccgttcatccaatcagaagatacaggtccgggtccgtttacgatctgtcctcccgtgaagaggtgatggatacaaaaagcagatgtctgtctttgatgtgcactaggaagatgcgatcccatggtcgtcatttacctagtgtcaatcgctcattaacagaaacaatttctgcctatcttgagaaacgattaagtcataaacaaattcacagcagacatctgtaggctatttcagcactgtgtaatctttcattactgacaggagtttctaacaaatcgaccttgttgacACTTTACTTgccctgctaaatctaatctgctcagtctgtatacaaaactactagtattaatataaaacattatataattatcacaacactttcttcaacttcctatacagagtcttcaagcCATATAGATAGTATGTGTAACGCCAGGGACGGCCAGGGAAggtggacccaagtgcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67100 lncRNA upstream 29899 19527897 ~ 19547421 (+) True AMCG00009022
TU67090 lncRNA upstream 88036 19489083 ~ 19489284 (+) True G53645
TU67076 lncRNA upstream 225521 19351535 ~ 19351799 (+) True G53631
TU67075 lncRNA upstream 225859 19351253 ~ 19351461 (+) True G53630
TU67072 lncRNA upstream 257036 19319781 ~ 19320284 (+) True G53627
TU67126 lncRNA downstream 104067 19681974 ~ 19682227 (+) True G53675
TU67156 lncRNA downstream 242672 19820579 ~ 19820929 (+) True G53695
TU67167 lncRNA downstream 381666 19959573 ~ 19960355 (+) True G53706
TU67179 lncRNA downstream 405962 19983869 ~ 19985883 (+) True G53711
TU67238 lncRNA downstream 451387 20029294 ~ 20030004 (+) True G53762
AMCG00009022 mRNA upstream 29813 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009016 mRNA upstream 1203052 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 1357067 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 1536359 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 1555001 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009026 mRNA downstream 283371 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 361169 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 685168 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 798888 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009034 mRNA downstream 878550 20456457 ~ 20461014 (+) True AMCG00009034
TU66948 other upstream 1023360 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 1657267 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 1846660 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 2237646 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 2903778 16672503 ~ 16673542 (+) True G53028
TU67402 other downstream 1590324 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 1696704 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 1714334 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 4305410 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 5234711 24812618 ~ 24816534 (+) True AMCG00009085

Expression Profile