RNA id: TU67167



Basic Information


Item Value
RNA id TU67167
length 783
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G53706
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19959573 ~ 19960355 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccttggcagccatacatgcccatgccacaacatgcttcacagatgaggtggtatgagcagttccttcccttctgcatactcttctcttcctatCATTCTGgtagttgatctttgtctcatctgtccataggatgttgttccagaactgtacagaatctttaaatgtttttttggcaaactctaatctggtcttcctgtttctggtttacatcttgtggtaaaccctctgtatttgctctggtgaagtcttctcttgattgttgactttgacagatatgcctacctcctggagggtgttcttgattgGACAGATCAAgttgttgtgaaggggtttttcttcaccagggaaataattattctgtcatccaccacagttgttttctgtgatcTTCCGgaccttttggtgttcctgagctcaccagtgcgttctttctttttaagaatgtaccaaatagtttattttttttttgctatctctctgattggtttgttttgatttaaaaggcaaaactgaaggcaaaacacccaaagaacaagcaggaactaaagacagcatGGGTtccagtcattgactgcaaaggatttgcaaacaagtactgaaactcacattttaattaatgattattttagtttgtccaaatacttctgagtccctaaaattgggggggaccacatctaaaaatgggtgtaattcctacactgttcacccaatttggtgatgaaagtctatacttaaagcacatcttgtttcctgTGGTGGtatagagccaaaatgatgaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67156 lncRNA upstream 138644 19820579 ~ 19820929 (+) True G53695
TU67126 lncRNA upstream 277346 19681974 ~ 19682227 (+) True G53675
TU67113 lncRNA upstream 381666 19577320 ~ 19577907 (+) True G53663
TU67100 lncRNA upstream 412152 19527897 ~ 19547421 (+) True AMCG00009022
TU67090 lncRNA upstream 470289 19489083 ~ 19489284 (+) True G53645
TU67179 lncRNA downstream 23514 19983869 ~ 19985883 (+) True G53711
TU67238 lncRNA downstream 68939 20029294 ~ 20030004 (+) True G53762
TU67240 lncRNA downstream 69801 20030156 ~ 20030431 (+) True G53764
TU67270 lncRNA downstream 143425 20103780 ~ 20104000 (+) True G53791
TU67272 lncRNA downstream 176277 20136632 ~ 20212802 (+) True G53793
AMCG00009025 mRNA upstream 10138 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009026 mRNA upstream 43667 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009022 mRNA upstream 412066 19544364 ~ 19547507 (+) False AMCG00009022
AMCG00009016 mRNA upstream 1585305 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 1739320 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009032 mRNA downstream 302720 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 416440 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009034 mRNA downstream 496102 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009035 mRNA downstream 725790 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009038 mRNA downstream 1037543 20997898 ~ 21087025 (+) True AMCG00009038
TU66948 other upstream 1405613 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 2039520 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 2228913 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 2619899 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 3286031 16672503 ~ 16673542 (+) True G53028
TU67402 other downstream 1207876 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 1314256 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 1331886 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 3922962 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 4852263 24812618 ~ 24816534 (+) True AMCG00009085

Expression Profile