RNA id: TU67292


Basic Information

Item Value
RNA id TU67292
length 593
RNA type TUCP
GC content 0.65
exon number 2
gene id G53809
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20179799 ~ 20271814 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATCTGACCTGCCCTTACCTACATTGTTCTAACATGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCTCGGCGCAAGATTTACACCCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCGCGGGCCCCTCTCTCGGGGGGAACCCATTCCAGGGCGCCCTGCCCTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCTGGCTTCTCTGGGATCGGTCGCGTTACCGCACTGGACGCCTTGCGGCGCCCGTCTCCGCTGCTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCTGGGGGCGACGGAGACGGAGAAGACCCGATCCCGGCGCGACGGGGGGCGTTACCGGCCTCACACCGTCCACGGGCTGAGCCTCGATCAGAAGGACTCAGGCCCCCGATCGACGCCGGGCGAGGCGGTCTTCCGTACGCCACATTTCCCGCGCCCGCCAGGCGGACGGGGATTCGGCGCTGGGCTCTTCCCTCTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTTCATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67269 lncRNA downstream 100732 20099747 ~ 20100015 (-) True G53790
TU67255 lncRNA downstream 130572 20068911 ~ 20070175 (-) True G53776
TU67252 lncRNA downstream 138568 20061527 ~ 20062179 (-) True AMCG00009027
TU67228 lncRNA downstream 194656 20005889 ~ 20006091 (-) True G53752
TU67227 lncRNA downstream 207495 19993033 ~ 19993252 (-) True G53751
TU67339 lncRNA upstream 321903 20585988 ~ 20586203 (-) True G53849
TU67389 lncRNA upstream 798988 21063073 ~ 21063351 (-) True G53899
TU67407 lncRNA upstream 1010645 21274730 ~ 21275341 (-) True G53916
TU67409 lncRNA upstream 1028390 21292475 ~ 21293901 (-) True G53918
TU67445 lncRNA upstream 1507561 21771646 ~ 21771991 (-) True G53953
AMCG00009031 mRNA downstream 50255 20148097 ~ 20150492 (-) True AMCG00009031
AMCG00009030 mRNA downstream 90547 20108946 ~ 20110200 (-) True AMCG00009030
AMCG00009027 mRNA downstream 138633 20061524 ~ 20062114 (-) False AMCG00009027
AMCG00009028 mRNA downstream 190502 19971515 ~ 20010245 (-) True AMCG00009028
AMCG00009029 mRNA downstream 233748 19961027 ~ 19966999 (-) False AMCG00009029
AMCG00009037 mRNA upstream 477206 20741291 ~ 20741486 (-) True AMCG00009037
AMCG00009036 mRNA upstream 477408 20741493 ~ 20742332 (-) True AMCG00009036
AMCG00009040 mRNA upstream 1030239 21294324 ~ 21295469 (-) True AMCG00009040
AMCG00009039 mRNA upstream 1031458 21295543 ~ 21436422 (-) True AMCG00009039
AMCG00009041 mRNA upstream 1605527 21869612 ~ 22033107 (-) True AMCG00009041
TU66751 other downstream 2332051 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 2453704 17736589 ~ 17747043 (-) False AMCG00009001
TU66472 other downstream 3287448 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 3586286 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 3795621 16404710 ~ 16405126 (-) True G52951
TU67499 other upstream 1919003 22183088 ~ 22183565 (-) True G54003
TU68185 other upstream 4889181 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 4909592 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 6529456 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 7349513 27613598 ~ 27618089 (-) True AMCG00009165

Expression Profile