RNA id: TU67408


Basic Information

Item Value
RNA id TU67408
length 1661
RNA type TUCP
GC content 0.39
exon number 1
gene id G53917
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 21292241 ~ 21293901 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATTTTGCAAATATTACTGGTCCTAAACAGGCCTAATGCATGAATCTAAGATATATTCAAGATGAGGCAAGCATGGTGTTTCAGTCAgagattagtttatttttaacaaacattaaaatatcatcattcaaataattcaacaatatattcaaaatagttaaaaataacaatatttagttaaatataataaacaaaaatatatatattttacaacatatttaTGAAAACCACAGTGAAATACTCTCTCAACCCAATGCAGGGTTTCTAAATAAGTGCTCATATTTCTGGCTCAAGGGACGTAACTTCAGCTAGGTAAGTAGTGCAATAcgtatataaatatgaaataacataACTGATTTTGAAAACAAGATTTATTGTCAGTGCAGGTTTTGAAACATGCCAATAGCCTGTCTACCCCTGTACTACAGTATATTCCAGACAGACTTGCTCTCTGCAGGGGTTTTCACACTGCATTGTCTAGAACGCACAGAAGAGGCAGCATGGTGGCTCTTCCACCAGGTCCTTGTATACTTTCTAGGATCAAATTTGGATGTCCATTGATGTTAATCTGTGGCGGTTGTAAGGACAAAGATATTGCAGTCCCTcgtatttattttatctgggGTGCCAGGTATAGTCTCCTATACCAAGGGAGAGAAATAATCTTTATGTTTCCTTCCCAACTCATCACAGGGACATATGGGAGGGAGGCTTACCAACCCCCTTCCCAATGCCCTAATTCCAGGGAGGTGCTATGGCCATCCAACAGGTGTGTCCAGGAAAGAAAGACAGTTTCcgtaaataagaaaaataaatacgtaTTAGGGATTCAACAAATACGAAATGAAATGTACAATtcatcagaaaataataaataaacagccaaCACAACCAATAACATTCCGTGGAACATCATATGGTTGCATAGTTCTTATCCCCCCCTCTTACAAACTTTATACATTCCTTTCATACATCCTGTATAGGTTTTTTATGAAGCTTAGGCCTAAGCAGTCATAGTATGCCATACAGTGTATTCATGATCAACCAAGCTGAGAAGGCTGGAAAACAAAGTCACCTTAATAATCCCACCATCCCGAATACAGAATCAACCACCAGTAACTAAAAAACAATACGTACTAAACAAACCACGCGGAATGAAATCCACAGCTATGACGCCGACAGCATATTAGCCTCGCAGCACACCACTGCAAACCAAACCCCCATTCCACACAGTATACGAATCCTGGGTTAATGCTTTTCTCCACAGCGAATCATTCGGATAGTCCTCCGTTCCCCACTCTTTTGTTATCTTCCTTACAAACAGTAGAGGTCCGtacatcagtcagtcagtcagtccgaAGCGTCGCTAATACatcaccaataaaaaaaaaacacaaccctcTTCACTCATCTGTGCGCTGTTTGGCATCCCTGACGGCTCCACTACACTGCAGTCATCTTCTCACTCGGCTGAGTCACATACTAGCCGCTCGGTACATCCCGCATAGGTCCTTGATCAATAAACCCCAGTTACCGGAGGTTATAACAAAAAGGAAGAACAAACCTAACCTAACTAATAACATTAAActatgaaaataagaaaaaaaaaatatgcgGCTTGTGCTAAAAAGACCCGCCCCGCCTGGAACACCCTATCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67404 lncRNA upstream 60036 21231754 ~ 21232205 (+) True G53913
TU67403 lncRNA upstream 60544 21231350 ~ 21231697 (+) True G53912
TU67390 lncRNA upstream 226244 21065158 ~ 21065997 (+) True G53900
TU67385 lncRNA upstream 254480 21037490 ~ 21037761 (+) True G53895
TU67376 lncRNA upstream 318054 20973977 ~ 20974187 (+) True G53886
TU67430 lncRNA downstream 279473 21573374 ~ 21573766 (+) True G53938
TU67438 lncRNA downstream 386844 21680745 ~ 21681260 (+) True G53946
TU67442 lncRNA downstream 477375 21771276 ~ 21771532 (+) True G53950
TU67448 lncRNA downstream 555812 21849713 ~ 21850231 (+) True G53956
TU67482 lncRNA downstream 734783 22028684 ~ 22029096 (+) True G53987
AMCG00009038 mRNA upstream 205216 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 599854 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 831227 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009033 mRNA upstream 897422 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009032 mRNA upstream 1028375 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009042 mRNA downstream 1136439 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009043 mRNA downstream 1319451 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009049 mRNA downstream 1338816 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009050 mRNA downstream 1375983 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 1410285 22704186 ~ 22705397 (+) True AMCG00009052
TU67406 other upstream 16887 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 123666 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 2738281 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 3372188 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 3561581 17729366 ~ 17730660 (+) True G53298
TU67814 other downstream 2589416 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 3518717 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 3621128 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 4290991 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 6319682 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile