RNA id: TU67482



Basic Information


Item Value
RNA id TU67482
length 413
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G53987
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22028684 ~ 22029096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


taattattgtaatggtCTCAGGTATTTAAGTTAGATAAAAGGACAAAtataagcacattgttttgaaagtttgacaaCTCCACACAAAACAGTATCTACACTAGGAAGTAAAGCTGATTCAGTaaacacaggagatatgatgctgctgacgacagctgagtgctgtactgaaataatttgataaATGAGATAAATTGgaatcaagattattattattttgaattgtccctTTACTAGAAACTTTAtatgccttttataaggaggatctctgatgttgtgcgaaccacacattgtgtcttcagatgactGATTTATTCCAGATATGCATATTATGAATCGTGTCCTGAAGGAACCGATGTCTGACCCGTAGTGGCAGAGGTGCATATGGAGAAGACGCTGGTGTTCTCattgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67448 lncRNA upstream 178453 21849713 ~ 21850231 (+) True G53956
TU67442 lncRNA upstream 257152 21771276 ~ 21771532 (+) True G53950
TU67438 lncRNA upstream 347424 21680745 ~ 21681260 (+) True G53946
TU67430 lncRNA upstream 454918 21573374 ~ 21573766 (+) True G53938
TU67404 lncRNA upstream 796479 21231754 ~ 21232205 (+) True G53913
TU67483 lncRNA downstream 129 22029225 ~ 22029565 (+) True G53988
TU67484 lncRNA downstream 1045 22030141 ~ 22030434 (+) True G53989
TU67487 lncRNA downstream 14448 22043544 ~ 22044055 (+) True G53992
TU67490 lncRNA downstream 76094 22105190 ~ 22105403 (+) True G53995
TU67496 lncRNA downstream 118775 22147871 ~ 22148426 (+) True G54000
AMCG00009038 mRNA upstream 941659 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 1336297 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 1567670 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009033 mRNA upstream 1633865 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009032 mRNA upstream 1764818 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009042 mRNA downstream 401244 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009043 mRNA downstream 584256 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009049 mRNA downstream 603621 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009050 mRNA downstream 640788 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 675090 22704186 ~ 22705397 (+) True AMCG00009052
TU67408 other upstream 734783 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 753330 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 860109 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 3474724 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4108631 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1854221 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2783522 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2885933 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 3555796 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 5584487 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile