RNA id: TU67496



Basic Information


Item Value
RNA id TU67496
length 556
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G54000
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22147871 ~ 22148426 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tggcaacagggtagtgaatttatgaatagcagtgggatttaggcagcgagtttctatattcctctcctgtgtgtctgattctactccaggcagctcaaatgtaataaggcagtggtcggaaatcgtctggttttggggtgatattattaggttgtgaatctgtaccccacgggtaataactagatctagtgtgtgattgtgacgatgtgtgggtccagacacatgctgagtgaagcctacagactccaatagggacaagaaactaacagtgagggggtcgtctttaatgtcaatatgtatgttaaagtcccccaaaataatgagtttatcataatgtatggctaagtcagataagagattgctaaattcggtcataaaaaaggaataggggcctggtggcctataaatagctataagctgaagaggtggattaagcctaagttctacctggtgaatttcaaaagatgtgaagctgtctaatggcttagtaGACAGGCGCAGGTCTGTGCGGTAGATGGTGGCCAGCTCCCCCCCACGGCCTGTTGTACGGGCCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67490 lncRNA upstream 42468 22105190 ~ 22105403 (+) True G53995
TU67487 lncRNA upstream 103816 22043544 ~ 22044055 (+) True G53992
TU67484 lncRNA upstream 117437 22030141 ~ 22030434 (+) True G53989
TU67483 lncRNA upstream 118306 22029225 ~ 22029565 (+) True G53988
TU67482 lncRNA upstream 118775 22028684 ~ 22029096 (+) True G53987
TU67530 lncRNA downstream 371440 22519866 ~ 22528083 (+) True G54030
TU67532 lncRNA downstream 372630 22521056 ~ 22542762 (+) True G54031
TU67534 lncRNA downstream 386167 22534593 ~ 22603477 (+) True G54032
TU67571 lncRNA downstream 541512 22689938 ~ 22691180 (+) True G54063
TU67632 lncRNA downstream 558715 22707141 ~ 22707844 (+) True G54101
AMCG00009038 mRNA upstream 1060846 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 1455484 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 1686857 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009033 mRNA upstream 1753052 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009032 mRNA upstream 1884005 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009042 mRNA downstream 281914 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009043 mRNA downstream 464926 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009049 mRNA downstream 484291 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009050 mRNA downstream 521458 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 555760 22704186 ~ 22705397 (+) True AMCG00009052
TU67408 other upstream 853970 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 872517 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 979296 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 3593911 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4227818 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1734891 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2664192 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2766603 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 3436466 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 5465157 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile