RNA id: TU67499


Basic Information

Item Value
RNA id TU67499
length 478
RNA type TUCP
GC content 0.49
exon number 1
gene id G54003
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22183088 ~ 22183565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataaaagacacctgtccacagacgcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaaaaactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaagggtgaggaatcagcccacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctggagtttgccaatgaacatctgaatgattcagaggagaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67495 lncRNA downstream 35524 22147308 ~ 22147564 (-) True G53999
TU67447 lncRNA downstream 374477 21808284 ~ 21808611 (-) True G53955
TU67445 lncRNA downstream 411097 21771646 ~ 21771991 (-) True G53953
TU67409 lncRNA downstream 889187 21292475 ~ 21293901 (-) True G53918
TU67407 lncRNA downstream 907747 21274730 ~ 21275341 (-) True G53916
TU67504 lncRNA upstream 120043 22303608 ~ 22303893 (-) True G54008
TU67599 lncRNA upstream 445766 22629331 ~ 22630508 (-) True G54078
TU67662 lncRNA upstream 609447 22793012 ~ 22826612 (-) True G54124
TU67677 lncRNA upstream 792896 22976461 ~ 22976682 (-) True G54139
TU67700 lncRNA upstream 955890 23139455 ~ 23139692 (-) True G54161
AMCG00009041 mRNA downstream 149981 21869612 ~ 22033107 (-) True AMCG00009041
AMCG00009039 mRNA downstream 746666 21295543 ~ 21436422 (-) True AMCG00009039
AMCG00009040 mRNA downstream 887619 21294324 ~ 21295469 (-) True AMCG00009040
AMCG00009036 mRNA downstream 1440756 20741493 ~ 20742332 (-) True AMCG00009036
AMCG00009037 mRNA downstream 1441602 20741291 ~ 20741486 (-) True AMCG00009037
AMCG00009044 mRNA upstream 291789 22475354 ~ 22486801 (-) True AMCG00009044
AMCG00009047 mRNA upstream 327627 22511192 ~ 22529264 (-) True AMCG00009047
AMCG00009046 mRNA upstream 357182 22540747 ~ 22556988 (-) True AMCG00009046
AMCG00009045 mRNA upstream 375964 22559529 ~ 22606887 (-) True AMCG00009045
AMCG00009048 mRNA upstream 465129 22648694 ~ 22666185 (-) True AMCG00009048
TU67292 other downstream 1919003 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 1919003 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 4314392 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 4436045 17736589 ~ 17747043 (-) False AMCG00009001
TU66472 other downstream 5269789 16853029 ~ 16913299 (-) False AMCG00008989
TU68185 other upstream 2969701 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 2990112 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 4609976 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 5430033 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 6874719 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile