RNA id: TU67649


Basic Information

Item Value
RNA id TU67649
length 607
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G54116
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22806239 ~ 22810596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccgcttcctgtttgtatgaaaggtgacgtctgcacaaagacttcctctttttgccctttgccttggttcgtcaagacagAACGGGCTCTGAAAACACCGGGACAACAGGACGAGGACAGCGAAGCTACGAGCAACACTGAatacaggataagagcaaagGATACTTTTGGGGATGAACATTTGTAGGTCAAAACACGGTTGTCTTCCAACGTTGGTCCAACCACTTATGATCCGTCGGGCAGACGTTGGCCCAAcgctgctgtgctatctggGGGGTGAGTGAGGGGACAATTCCACCTTTGTAGCTGAATAAGAAACAGATTccttcaaacacacaaagcagcaCAACAGGGATGAGGAGCTCTACGTGCCAACACACAACAGTTCATCTATGGGAGTAAAACGGCTTGCTTGTTTACAAAGATAATATTAGTGTACATGGGGGTGAGAAAAACTTTCCTGCAGGAAATTCCCAGGGATGAAGATAAGCAGACATTTGAAGACTTGAGAAGTCAACTACACTAAGGGAAGCTGATATTTTGGACATGAAACTGATTTTGTCTagtacaaataaatcaatttgaTTCTCTTTTGTTCTAAATCTT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67632 lncRNA upstream 98395 22707141 ~ 22707844 (+) True G54101
TU67571 lncRNA upstream 115059 22689938 ~ 22691180 (+) True G54063
TU67534 lncRNA upstream 202762 22534593 ~ 22603477 (+) True G54032
TU67532 lncRNA upstream 263477 22521056 ~ 22542762 (+) True G54031
TU67530 lncRNA upstream 278156 22519866 ~ 22528083 (+) True G54030
TU67676 lncRNA downstream 165865 22976461 ~ 22976682 (+) True G54138
TU67706 lncRNA downstream 358845 23169441 ~ 23191582 (+) True G54166
TU67717 lncRNA downstream 424027 23234623 ~ 23235029 (+) True G54174
TU67740 lncRNA downstream 636558 23447154 ~ 23449477 (+) True G54194
TU67786 lncRNA downstream 852797 23663393 ~ 23664094 (+) True G54237
AMCG00009052 mRNA upstream 100842 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009050 mRNA upstream 119627 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009049 mRNA upstream 157763 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009043 mRNA upstream 174887 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009042 mRNA upstream 364772 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009053 mRNA downstream 40395 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009056 mRNA downstream 847605 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009058 mRNA downstream 1006229 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009059 mRNA downstream 1014626 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009061 mRNA downstream 1062112 23872708 ~ 23885824 (+) True AMCG00009061
TU67408 other upstream 1512338 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 1530885 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 1637664 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 4252279 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4886186 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1072721 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2002022 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2104433 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 2774296 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 4802987 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile