RNA id: TU67740


Basic Information

Item Value
RNA id TU67740
length 2324
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G54194
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23447154 ~ 23449477 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCATTTCTCTGCAATGTGTATTCATATAACCGCTTCACTGTGTTTGCTCCATTATAGCACAGGTCACATCCAAAGTATTCCTGGTTAAAATAACAATGTCATAACTGTGCTGCCTCTCAACAGCTTGTACTTATCCACCAAGCTTTTGCACAAGTGAGAAAAAAGGCACAGCTGTATGATTCACATTACCCTCAATTCTAAGTTGGTTGTTCAcaaaccaaaattaaacaaataaaattaatagaCCTTACAGTCATACAATTTTatggtgtgttttttatatatataatacatacaaaaagagCTGAGTCTGTACATTGTGcagatttgatttgtttgacaGACTGGCTATGgaattatgaagaaaaaataacacaataaaaaatgtacagagcTAAAGAATATATGGCTAAAAggtcaaataaaaacatcttggcAGTACCAAAAATTGTCAAGTTCAATTCGATTGGCTGTTTCGGTTCATCTACACTTTTAAGCACAATCAAATTTTCACATTGCAAATCCAAACATCTCTGCTTACACTTCACAGTTACAGCAGAAATCTAGGTTTGGCATAAGCACAGGGACTGGTTCCCAGACTTTCACTTTCTGGCTCAAGAATGACTGACCAGGCCAGACTATTGggttcaaaaaacaaaacgacaacaacaaaaacaacaactagtACTAGCCATTTCTCAAAAGTTTAAATTTTTTGAGTTGTTATTTTAACCTTGAACATATGTATGTTGTATCTCTTATTTAACACAAGAAAGAAGGACAATTTGCGAAAGTAAATTTGTCTCAGCCAAGCCTTGTTAATATATTGGTAAGTTATTTTGATTACATAGTATGTTttaagaactgaaaaaaaaacagaacagaatttctttaaaaacatgccTAAatcttaatgcatttatttaatatgacaCCTGAAAAAAGCGATCCTGATTGCAAATGTCAGCTTTTAGGTAagtgcaataaaacataatcataacatgcaaaataatcatATTGTAGTTTTTTCATTACATGCAGTACTTCTGATTGATCCAATTTGCCCAGGGCACATGATTTTACTTAAAACCACTGCATAATGCTCagttaaagcattttaattaaaacagtataGAATTTTCACCAgtgtttcatttaaaagtaaaaggttACACAGTTTTATAGAGGACTGACAAAAAACATAGGATTAGTACACAAAGTTACATTGGAGAACAATTGTTGTTACATCTTCTCTATAGAAGTGATAGTATTTCAGCTATTTTAACAGTGGTgccaacatacatttaattgttttaatacctCAAGAAAAAATCTTAAGAAAAATCTTAAACATCTGTTTACAGAAATCAGTTAGTCACTTGGGTCAGTCTGATCTGATTTTAATCCTCATATAACCACATACTCCAGTGGTATAATGTAACATAGCACTAAAACTGGCTAGAAACAGAGGAGTGGTTTAGCCATTagtgttttaataaagaacaaTCATATATCAGAATACAACCTATATAAATACTTGTAAAACTGGCtcatatgtatttcattatacagttcagttaaattaaagttgatgtttaacttaaataaaactaacatgaaaaacagacaaCTGCTTTGAATTTCCAAATTCAAACAGAACAGTATGAAATTTGTTAAACATTGCAATATCTTAGGCAATAgacataaatatgaaaaaatgtgaaattttatgcagtttttttGTGACCATAAACTGTAGTGCTTGCATTTTCAAGAGGCTGTTAGGATACCCAAGTATGCCTAAAAATTATgtgcagaggagagagaaaaattatataaaaataatggattaaattaagACTTTGTATTTCTATAAAATGGCCTTCCCAGAACACAGTCAACATTGTAAAACTTCATAatagtttgtatatatgtaatatctACAGTATACAGTAATAAGGTCTTTCTCAGAAATGCAAACCCTAATATCTGTGGCTTGCATTTTGGGCATGCATTAGGCTGCCCTACATGACATATGTCAGGTTCTCCTCTTTACATGTATAAGCATATATACAAGATACATATAAAAGGCTCCAGTTTCCCAGCCAGAGTGCTGCAGCACATTGGTGTGCCTTCAGCCATGTACagccattaaatattaattaaatcaacatGAATAAGTTCCTGACAGAATTCAAAGTTAATATGCcacacaatattttgtattaagctGTGCCTGTGAATCCTCACTTCATAAAGGGATAAAGAAAGACtagctttaaatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67717 lncRNA upstream 212125 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 255572 23169441 ~ 23191582 (+) True G54166
TU67676 lncRNA upstream 470472 22976461 ~ 22976682 (+) True G54138
TU67644 lncRNA upstream 589632 22778375 ~ 22857522 (+) True G54112
TU67649 lncRNA upstream 636558 22806239 ~ 22810596 (+) True G54116
TU67786 lncRNA downstream 213916 23663393 ~ 23664094 (+) True G54237
TU67787 lncRNA downstream 214680 23664157 ~ 23664652 (+) True G54238
TU67815 lncRNA downstream 440650 23890127 ~ 23894287 (+) True G54264
TU67901 lncRNA downstream 716313 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 828428 24277905 ~ 24278561 (+) True G54356
AMCG00009053 mRNA upstream 592660 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009052 mRNA upstream 741757 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009050 mRNA upstream 760542 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009049 mRNA upstream 798678 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009043 mRNA upstream 815802 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009056 mRNA downstream 208724 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009058 mRNA downstream 367348 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009059 mRNA downstream 375745 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009061 mRNA downstream 423231 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009064 mRNA downstream 579915 24029392 ~ 24049944 (+) True AMCG00009064
TU67408 other upstream 2153253 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2171800 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2278579 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 4893194 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5527101 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 433840 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 1363141 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1465552 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 2135415 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 4164106 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile