RNA id: TU67786


Basic Information

Item Value
RNA id TU67786
length 702
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G54237
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23663393 ~ 23664094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCtaattatgaaatatgtatgaTGGTTTGCCGATACAAAAAAATGGGTTTTCAACAgcttattggtttatttattttatttttattttttttaattttaatttttctgatcaaaaaatgaaatgtttatgtgATGTTTTCCCCATCTGTCAATTACTTCTTGACCGCTCCCTATTGGTTTTCTACAAAATCAAATTCAGTAAAacgaattattttaaagtaatttaattttcttttcgtCTCTCCTTTATTTGTTCACAATTAACATCGAAGTCATTCTTCTGAGTGATAGGACAACAACAATCGGTAAATGgcataattttataaataagatTACTCCTGTCTAATAACTGCTAAACGCTCGtttcttgaaaacaaattcaGTTTCACGTTGTTTGGTTTGATAGATTTGCAACAATACTGCGACTACTAACTTAGCTACGGTTGGAGTAACTGTTAAGCTTTGTTCTTCGCTGTAGCTTGCTTGACCGCCCCATTAAGCAGACAGCACATCAACAGACTCCAGCGGTCATGAGCCTGGCTAACACTGCTAGTTCTCGTGGGGTGGCACAGAATGGGTTTCACAAGCTTGCTCTTCGGCAGACAAGACTGACACATTTAACGacttcatatgtgtgtgtgtatatatatatatatatatatatcaacacatctgtacacacacacacacacacactatat

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67740 lncRNA upstream 213916 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 428364 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 471811 23169441 ~ 23191582 (+) True G54166
TU67676 lncRNA upstream 686711 22976461 ~ 22976682 (+) True G54138
TU67644 lncRNA upstream 805871 22778375 ~ 22857522 (+) True G54112
TU67787 lncRNA downstream 63 23664157 ~ 23664652 (+) True G54238
TU67815 lncRNA downstream 226033 23890127 ~ 23894287 (+) True G54264
TU67901 lncRNA downstream 501696 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 613811 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 1119416 24783510 ~ 24787085 (+) True G54430
AMCG00009056 mRNA upstream 1180 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 808899 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009052 mRNA upstream 957996 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009050 mRNA upstream 976781 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009049 mRNA upstream 1014917 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009058 mRNA downstream 152731 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009059 mRNA downstream 161128 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009061 mRNA downstream 208614 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009064 mRNA downstream 365298 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009066 mRNA downstream 399748 24063842 ~ 24071730 (+) True AMCG00009066
TU67408 other upstream 2369492 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2388039 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2494818 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5109433 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5743340 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 219223 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 1148524 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1250935 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1920798 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3949489 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile