RNA id: TU67787


Basic Information

Item Value
RNA id TU67787
length 496
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G54238
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23664157 ~ 23664652 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTCACACTTTAAATGTCAACACATGCCTATGGCGTACACATATACGTATATGTATGATAATATGAatgtttacatatacatatatgttagagtgtgtatgtctgtgaaTGCATGTTTGTGAATGGGTGTGTTTAAACATAAAACCCTTTAACTAATTCGAACAAGGGCATCAACAGATATTCTTCCGGTCTTAATTTAgctcatttttcattttctatgcagtatttgtatttctgctttACTACCACAAAAGCTAATTTTAGacgcatttgttttgttgtggaatACATAGCGCCACCTTGCAGgattgagaaaataattattcaaagaGCAGTTGatttttgaaacaaaaatgtttggcTCTGAATCTTATTCCCGTATCCTTCGTTTTCTTTGTTAACGGAGAATtcaaataggtacatttcaaaatgagatGGAGATTAAGGACAAAATGAGCAGTTGCCACACTGGAACAccagtacatatacatatta

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67786 lncRNA upstream 63 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 214680 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 429128 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 472575 23169441 ~ 23191582 (+) True G54166
TU67676 lncRNA upstream 687475 22976461 ~ 22976682 (+) True G54138
TU67815 lncRNA downstream 225475 23890127 ~ 23894287 (+) True G54264
TU67901 lncRNA downstream 501138 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 613253 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 1118858 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1507349 25172001 ~ 25172864 (+) True G54547
AMCG00009056 mRNA upstream 1944 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 809663 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009052 mRNA upstream 958760 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009050 mRNA upstream 977545 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009049 mRNA upstream 1015681 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009058 mRNA downstream 152173 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009059 mRNA downstream 160570 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009061 mRNA downstream 208056 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009064 mRNA downstream 364740 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009066 mRNA downstream 399190 24063842 ~ 24071730 (+) True AMCG00009066
TU67408 other upstream 2370256 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2388803 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2495582 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5110197 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5744104 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 218665 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 1147966 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1250377 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1920240 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3948931 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile