RNA id: TU67815


Basic Information

Item Value
RNA id TU67815
length 4129
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G54264
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23890127 ~ 23894287 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTATATTATGGTGTGCTTTAGTCAGTCACTAGAGGTCCCCAAAACACTATTGTATGTTTTACTTAGTTCAGATACCAATTTAACATGGAGACCTCATTCAGGAATGTGATACAACATTATAGCCTTAAGATGCCTTTCTATTGCAGATCATTAAATGTTAGTTATTGTTCAGCCTGTCTTTAAAGAGTAAAGTCCAGCTATTAGGCTTGAGTAATGAGGCAGTTTGCATAACTTTATACAATGTCACAATTCAAGCCACATTTAAAGAGCAGTCTATAAATACTGTTATGGTAGTACtgggaaaaataatacatttatgtacaAAATTATACATGTAATCAAAACAATATGTGGACCTACCGTTCCAAAGAAAGAGACCACATTGACTCTATAGTTAAcaattttattacttttaacagTCTAATAAACTCCttaaaaaatAACAGCAAGagtacaatacattaattttcacAGTATAGGCTACTCCTTTCCATTGCTCACAAAGAGTGCTCTGCTTTGAAATTTCAAACTAATCCAGTTGAACTATCAATCAGACTTAATCTATGTTGTATACTGAATATTTAACTTTGGGGAAACCACTTCTTAAAAAGACTATTATAAAACAACTGGCATTGGTCTGAGGAGCACTAACTTACCAGAAAAgccttttgatttgatttttgtagCATCACAAAATCATTGGAATCAATTGACGGAGGTGATGAATGATTTGATAATGTGCGGATCCTGAAACTATGCTTCTTACTTAGGGTCATTGCACAACATTTCTTCTGCAGTCACACATATGGCAATAATTATCTGAGCATTTACACAAATTAAGGTCATTTGATCCTGCTTTTAAaacccaaaataataataaaaatataaaatcaagtgTTACTCTTCCCCACCACTAGGACCATAATAAAGTacacctgcctttaaaacaaggGTAATCTTCACAATGAAGTGTCAGTACGTATTAAGGACACAAACACTTGTCTtgaacatacaaacacacatgaaaataaaaacaaacaattaaagatAATGGCCTGGTGCTCATgcagaatacaaatgtatagtGTGTATCACGCTGACAACCAAGATTTGGTTTAGACAGCAGCTAAGGCACATGTTAATAACGGCCCTGTTACTCTCAGTTTATTTGCCCACAgtgcttcttaaaaaaaaaaaaaaaaaaaaaaaaagtttaaatatccCAAGTTGTTTGTTTCGTTTTCTTTTGGGCTCATTTGATATTGTTTGATTCATATCCCAGACCAATTCCCTTCTAACCAACACTCTCAATCCCTGGCTTTCTAATTGTGATAGGATTTAATTTCCAAATCCCTCCCACCATCTCCAACTCAAAACAGCTGAAAAATTAATTAAGACATTGCGATTCATTCCCTTGTTCAAAACTAATAGGTTGTTCTTTTGCCTGTTGTTATTTGACTCAAAACAGGGATTGCCTAATACTGCTAGCTTCGTTTCATTGATATGCCTAAACATTCAATCCACCCTGTTCTCTacaattcaatattcaatacCTGGAAGTCTGGACTCCACTGTTTACTGGTCTCTTATCTTTCAGGTCATTTTTCTCACCCAAACATAACTGCAATAAGTCCAACTCTCTGAATGCTCATATTTGGCGGACTTGTTTATggattagatttattttttcgtCATGAGGACATTCAGTAATACAATGTTGCAATGTGAGGTTCCCATGGGCCTACTTTATCTATATAAAATGGTAAGCTGGCTATCAGCACCAAATGTCAGCTTCAGGCCTACTATTTTGAACTGCAATAGTATACAGTTTACTGGTTGTTACATTACAACCATATATACAGAGACAGGAAGCACAACACTTAACAAAGCTTTAGGCCAAGCAACAATTGGAGATCGACTTTGGGGGGAAGTGAATAATTTGACTGGCGATCAACGTGAAGCAATCCaacaccataaaaaaaaaaaaaaaaaaagggaggtAGACAGAACTGAGCCatagattattattaagattatatTTCTGCCAATCCTAATGGTTTCAGATTATACACTTCTACAAGAAACAATTCATTAACTCGACTAATACTAGGCATGAGAAAAAGAACATAACTGTTGCAACAAGAGGATCTAGATATTTCTTCTCAGTTTAGCAATCTCTCCCCTGCCTTGTGCAATACATCCTCAGTTCTGCATTGTTCCCTTCAGCTAACCATCATCAGTCTTATTCAGCAATCACTTAACCATCTGTCATCTGATTTATTTCTGGGATGCTGACAAAACACCTTTCAAACTCTTGATTGTGGTTCCATACAGCTTCCATGCTAACTGCCAGTCAGATATCTGAGCCAGGCCATTTGTGGAATATCTGAATAAGGCAACGTTTTTCGAGATCTCCTAATCTACGAATATCCTCAAAACGCTTGCAGGGGAAAACAATATTCTGCTGTAAACAACACTGGGTGGTTACACATTCTGAAACAAACCAAAGCATGTTCGGCATACTCAGCCAGAATAGTCCGGGAAAGGGAAGACAAGAGCGACTAAGATTCTACTCATTCATCATTCGACAAAGACCGATTGTTGGATTCCTTGGATTTTTCTTCCGCCCACTCTGCCACAAAAGGTGATTTCTTAATCACTTGAACTCAGCATTTGCtacttgtgttatttttttcttcatcagtcaacaactttataaatatttatatatagatatataaatatttatatatatcaccTTATATAAAAAGCTTGCGCTCTCATACTGGAAGCTTCACTTAAATCActgaattcaaatgtaaaaaaattaaatattctctACCCTGATCCCTGCGGACACTATAATTGCAcacttctttttaaaaagaaatgagaAATTGAGAGCGCATACACATTTAACCCAAGTAAGCTGTTGGGGGTTAGAGAAAAAACAGAGCACTGCCTGCAAGCTCAGTAATACACCATTCACTTGCTCCACCAGCAACACATCACTGctactcttaaaaaaaaaaaaaatacatacatatatattctacataTCTGAAGTAACGGATGCAGATGTGTGGTAGGtacaaatgaaaaggaaatccAGACTGTGGTGCACACATAACCTGGACCTGCACTGCCTTACTATTCAAATCAAGAATAGACAAAGCCTGTAGTTTAAACCATCACTCATCTTTATAGATATTTAAAAGTTGCGCTGTCTCCACCATTTCAGTTGGCCTCTTGCAGGAACCAAGTAGATATTAATTTCGAGAGCAGAAGTTCAGAAATCAAGGTAGCACTGCTTCTGTACAGCAACCCATATAAGCAATTTgggcaaaaatgtgtttagttccccccccaaaaaaatcacGGTATGGAGCTTAATAtacctttacatttaattacaagcCTGTTTGTTTTAGACACTGCTTTACTTGTTTTACAATTGTAAGTATAATCCACAAAAAAGTCAGAAGTATTGTGTGCACACAGTAGCAGCCTTACTGCATCTTTATGTGAATTTAAATCCCACATTCCCATTAGTTGTttgaaacatgaaacattttgCTGTATGGATTTTTTTGCACAGATAATATAGCTTTGAAATACATCACAGGTTCACTTTCAGTTtgggaaggggggagggggtgtgtataaaacaaatcacattggCAAACGCaagctttaaaatgaatatatattaacaaaactaaagtatagctaaataaatgttgtagtcaatatacatacatacctatGACCTAAACAAGAGTCatgaattcaatacattttgaaagttaTCCAAGTCTTTTTTTGCGTCCACAGTCTTTTTATTGATATTCTGTCTTTCTCCCACCACTCACCCCACTTTTGAAATGGTTATTATTTCCACCAGCTGGTCAATAATCCAGGGTCCAGGGAAATCAAGACAAAGGTTTGACAAGGTAAAGTTTGTCTCCTTGTTCGCTTGTGAAAATGGGAGCTTTTTTGTAATGTTCCACCAACTCTTCCATGGAGCTGAATTTACGCTGTCCAATGCAGTATAGCTCATCTTTTAGCTGCACCTTGAAATGCTTGTTTTTGCCTTGGGCTTTCAGGGAAATTGAGAAATCATTTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67787 lncRNA upstream 225475 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 226033 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 440650 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 655098 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 698545 23169441 ~ 23191582 (+) True G54166
TU67901 lncRNA downstream 271503 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 383618 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 889223 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1277714 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 1413973 25308260 ~ 25308495 (+) True G54563
AMCG00009061 mRNA upstream 4303 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009059 mRNA upstream 49145 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009058 mRNA upstream 65040 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009056 mRNA upstream 227914 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 1035633 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009064 mRNA downstream 135105 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009066 mRNA downstream 169555 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009069 mRNA downstream 306070 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009070 mRNA downstream 318129 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009072 mRNA downstream 324517 24218804 ~ 24221967 (+) True AMCG00009072
TU67408 other upstream 2596226 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2614773 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2721552 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5336167 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5970074 17917666 ~ 17920053 (+) False AMCG00009009
TU68049 other downstream 918331 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1020742 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1690605 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3719296 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4872167 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile