RNA id: TU67824


Basic Information

Item Value
RNA id TU67824
length 285
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G54273
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23817062 ~ 23819790 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGCAAGTTGTTGTACTTTTCGTAGTTGTAAATTTCAGTTGAACGCTCTTTAGCATTGAACTGCCCCTCAACTGCCTCCTGCAGATTCTCAATCAGTACTTCATGCTTCATTCCACTTTGTTGCAGAAGGTTGTTCACAAGCAGAAAGTGTTCAGCACTGAAGTGGATGTCCACATGTGAGTTGGCAGTGACTAACTCAATATTCTCTGGCCTCCAGAAGTCAACCTCAATGCTATTGGCCAGCTCTTTAATTATTTCAACATGATCCTGGTTTTCTGGTTTC

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67722 lncRNA downstream 514377 23302454 ~ 23302685 (-) True G54179
TU67711 lncRNA downstream 625567 23180327 ~ 23191495 (-) False G54168
TU67710 lncRNA downstream 625567 23181156 ~ 23191495 (-) True G54168
TU67708 lncRNA downstream 647233 23169439 ~ 23169829 (-) True G54167
TU67700 lncRNA downstream 677370 23139455 ~ 23139692 (-) True G54161
TU67839 lncRNA upstream 18324 23838114 ~ 23847003 (-) False AMCG00009060
TU67953 lncRNA upstream 458093 24277883 ~ 24278536 (-) True G54363
TU68013 lncRNA upstream 808049 24627839 ~ 24710773 (-) False G54408
TU68011 lncRNA upstream 825840 24645630 ~ 24658532 (-) True G54408
TU68014 lncRNA upstream 833824 24653614 ~ 24658532 (-) False G54408
AMCG00009057 mRNA downstream 160912 23645454 ~ 23656150 (-) True AMCG00009057
AMCG00009055 mRNA downstream 347962 23450545 ~ 23469100 (-) True AMCG00009055
AMCG00009054 mRNA downstream 414570 23378607 ~ 23402492 (-) True AMCG00009054
AMCG00009051 mRNA downstream 999069 22721882 ~ 22817993 (-) True AMCG00009051
AMCG00009048 mRNA downstream 1150877 22648694 ~ 22666185 (-) True AMCG00009048
AMCG00009060 mRNA upstream 5439 23825229 ~ 23863035 (-) True AMCG00009060
AMCG00009062 mRNA upstream 74304 23894094 ~ 23914458 (-) True AMCG00009062
AMCG00009063 mRNA upstream 140809 23960599 ~ 23961852 (-) True AMCG00009063
AMCG00009065 mRNA upstream 231960 24051750 ~ 24062621 (-) True AMCG00009065
AMCG00009067 mRNA upstream 256609 24076399 ~ 24088941 (-) True AMCG00009067
TU67499 other downstream 1633497 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 3552977 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 3552977 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 5948366 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 6070019 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 1333476 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 1353887 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 2973751 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 3793808 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 5238494 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile