RNA id: TU68014


Basic Information

Item Value
RNA id TU68014
length 4476
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G54408
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24627839 ~ 24710773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTTCTGACATTCCATTGGGGCATGATTATACTTTACTTTATAGAATATTTTAACAAGAGTTTAACATCTCTCAATTCTTTGCATGATGAAGAACACTGAAAACTGGTATCtaagaatttaaaatgtaagaatcatttttcatttttcctatCAAACTACTGATCAAATTTCAGGGCACATATAACCTAGAAGAtggacaataataaaaaaaagtatactttATAGAGTTCAGTGGATACAGTCCATTTTAACATGGCATACagatttatggatttattgtaattgtttttaaaactatatgtTGCCCTACAAATGTTACTTGCCACAGTAAGTTCAAGTTGGGACTTATGCATTTATACCTCCCGTTATAGAAAACTATTACTAATAAATATCAAGAGGCTTACACTATAGGTTGATTTCCACATTTCTGTGCATATAATCAGTTGGTGATCCGATTCCATTATGTTGCCAATGTACCATTAGAAATATCATGACCATAAGAGAATTTCAAATACACCGCACCTACACATACTTCTCAagatattaataaaacagaacagcatatgctatttttttccattaacttTATTGCTAAATATTAGTCTCTATTTATAGTTACCCCATCAGAGGTGTTTAATATAATGGGCGATGAGCACTTGTTATAAAACTGCAACCAGAACACCACAATTCAAGACATGCCCCAACCCTCCCCAAGAAATCAACAGCAGGCAATCTGAACCTGGATTTCCACTTGGAAATACTGCCGAGTGCTGGATAAACCCACGTTGCTATTGAACTGTCTGGGATTTAGGTTTTGTGTAATCGATTAACTTAGTTGCTGCTCATTTATCCACTCCTTTCCTTAACATTTTaactagttttaaaataaatgataaaaaaaccacaaacatatgtaactataattacatttaagaagATAAGGCAGGTTGTTTAAACTTTTTAACAAATCTGGCTTATATCACTAATTACCATATACAGTGGCATCACCAAGTCTCTGAAAGACAAAAAGACTTGAACACAAAATCAAGATGAACAAGTGATAGATAGATGAAAAACATTGTCCCCCATTAGTccaaatgttatgtttatttgatgtattagCAAATTGTATTCACCAAAAGGTGGGATTTTCctttattcagaaaataaacagaccTAGAGGAGACTGAGATTTCATCAGTTTATAATGACATGCCAATGATGACCAAGTTCACAATCAAGGGTGTACAACTCAAATCCAAAGAGGTCACAAGTAGGAAAACcaaaattggaaaataatgtttaattaagcaaatgctGAGAATTAATGAGATGGAATGCAAACCAGAGCCATTGGCCCTCAATGACCAGAAACAAACAACTATTCCAGCATGTAAAACAGGCAGTTTGTAACTTATAAAAGCATAAATGCTAACAAAAGGCCAACTTCCCTTAGTATTATATGCagaatttgaataaattatgtaaccaaaacaagaaaagttgCTACTCTCAAGAGGATACAAAAAGACTTCAAGAGCTGTACTTTGCGATATATAATGCTACTCGGCTCTTGTAGGAGcagtttttaaaactaaataggACCGTGTAGAATATTTCCAGTACTGGTTTTGCAATGTAGAGAAGATTTATGGGACCTTAAAAGTTGTTAATACCTGTGgttctattttgtgttttgcactttgaaAACCAATAACCTCAGTTCAGTGGTTTCCCCAAATCAAGGAACATATAGAAGTATTTTAAGCTACCAACATCAGCATTTGATACCAACACACTGATCAGTGCTTAAATGATGCACGTTTTTCTAAGGTAGGATGagaaataacacttttaaatacataaacaaaatcagACCTCAATATATACTTTTCCCCCTCACATTGGAAAATATACATCAGAGTGTATAGGGAGGAGAAAAGCTTAATAGTATTGTAAAAGTTACAGAAACTTTACATGGTCAGTTGGTTGTAACACCTTTGAGAAGAGCTTCTGATGTACACATATGCAATGGAATGGTTGTGGGAACAAGGAATTACAATTAACAAATTCTATGCGACATTGACAGTCTCCCATGATGTGATAAATTACATACTGAAAACATGGTTGAATACTGTATCAAATAGAAAAatcttttgaagaaaaaaataaaaataaaaatgcagcgTATAATTCACCTGGATTCCTCTGTACAGACTAAAAGGGAAATTCACATATTACATAACCATTCAGTATTGAGACCAAATCAAGTATTTGTCAAAGTTTTACCAGAAGACAACTCCTTTAAACACATTCCAGAATAAATCTGTAAGTgcctacaaatacaaaatgagggACTTGAAAGAAAACccttatttaaatgttccctcCAAAGCAACATTTTGGGGAGGTTGTCCCCCCAGAATATTAACAAAGCTAGAAATTGAGGTCATGTGAAGGagtgaaattagaaaaataaaaacaaaccaaaatcaaaactaGGCAATAGATTTCTAAGAAACCTTGGTACCTctgaacacaacaaaaaaaaaaaaaaaaaagtttaaattgagATTGAGCTTCTTTACAGAAGCTTGATCTTATGGACTACTTGAGCTTGATTAACCAAGCAGTTCAGAGACCTCTTAATCTTGCGATTCATACAATGCAGTAAACAAATGGGGCTGGCCTAAAGCAAGCTCAAGACATTAAGTGGCTATATcagttaaaaaggaaatgagTTAAAGAAGCATTTTGCTACAGGGCCACAGGTCACTGGGATTTTGTTAAAAAGGCCAAAGACAGAGCCATTCATTTCTCACCAGGATGGAAGTTAAAACAAAGGACAAGagcattcaaattcaaataagaGCATGTCCGATAGCCATTAAGCTGAATctgatgagaaaacaaaaaaacacccaacTTGATTCACAAGTAAAACCTGGCtcacaaaaagcatttcaaagttGCGGTGCCTCAAAAGCCATCCTGCTGCACAATAACAATTGACATCTGTGGGAAATGGCAGGACATCACAGCCAACAGTAGATAGTGACAATAATTCTCAGCCTTGATATAGATTTTAACTCTTAATGGGAGGGCTCCAAATGATCAAATACCTTGAGagatcccccccccacacaagtTTTTTCCAAACAGCTTGGCTGATGCACTTTGATTACACTGGAGAGGGAAAAATAGCTGCAATTACATTAGCATTTTTCACCTCAACTAACACTCTTGGGTCACATGCACCTCAGGAGTTTTCTTTAATGATTAAAGTCCTGATTCTGACATGCGATTAATGTACAGACTTGGTCTTGATAATGCATGCAAATCAAAAATGGAATGAGAGCCAACATGCTTActagaggaaagaaagaaaataaaaaagaacacaagCTGCAGGGGGGAAGAGTTCTTGactcattttaatttcactgcatgataaatacaataaaagaaatAAGCAACTGAaaagtttttctatttttttttattttttattttttactccaGTCTGGTGACAAAGGCCTCGAGTGAAAATTTCTGTAACTTTAAATGCCCCTCCCCCAGGTTGAGTCCCTCTTAAGCACGCCACATGGCGTCAGCACAACATTCAGAAAGCCTATCTAGCTGAGACATGTACAGGCTTTGACACGGTTTTATTAAGGATGCCAATGACAGCCAACAAAGTTGGCTTTTTGTACAGAGGTAATAATTGCACATGGCCACCAGGTCTTACTTGGCTGCAAGTTTTTAAGGCAGACTGGCatttaggaaaacaaaacaaaaaaaaaacaaaacaaaaaaaaaatcactgaagTTTGTTTTCTAGGGTGTAAAAATGTTTGGTTGTACCCAAGGCCTGCTCTTAAGTGCTAACTACCGATAATCAGCAATTCCAGCTGCATCAGTTCCAGGGCATTAACATCTCTGCACCAACAGGAGGTGGCATCAACACTCAATATGTTGATTACCATATGGCCTCcaggggaagaaaaataaatctgggcACCttgtcagttaaaataaaatatataaaccaaaATGCATATCtcctggggggtggggagggatgaacaccaaataataaaaaaaaatactgtttaggTTTCAAAATTGGATCCcatcaatttaaacatttaggaATGTAAGTGGTAAGACTGACATCTTGAAGGCAAGAActcaattaaaaaggcaaaaaacaaaacctcagtGATTTGGCAGAATGCCAATCAGCCTACAAGACAGTTGTAAAAGTCCAGCACggttttgggaaaaaaaaaaaaaaaagaaaaaagaaattgaGGTTGTTTGTGAAGGCCATAGCTTTGGTGACAATTAGAACCAAAATTTAAGATTTGTGGTAGGTCTCAGCCTGAGCAGCCAGTCTCTTCCTATTTACTTGGTCATGGGCTTGATGGCAACTGCAGACTCCTCTCCCATGGCTGAAAGCACTGAGATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67953 lncRNA downstream 375078 24277883 ~ 24278536 (-) True G54363
TU67839 lncRNA downstream 806611 23838114 ~ 23847003 (-) False AMCG00009060
TU67824 lncRNA downstream 833824 23817062 ~ 23819790 (-) True G54273
TU67722 lncRNA downstream 1350929 23302454 ~ 23302685 (-) True G54179
TU67710 lncRNA downstream 1462119 23181156 ~ 23191495 (-) True G54168
TU68021 lncRNA upstream 5773 24664305 ~ 24666234 (-) True G54415
TU68023 lncRNA upstream 5773 24664305 ~ 24666234 (-) False G54415
TU68063 lncRNA upstream 129863 24788395 ~ 24791263 (-) True G54447
TU68065 lncRNA upstream 129863 24788395 ~ 24790042 (-) False G54447
TU68073 lncRNA upstream 155021 24813553 ~ 24847829 (-) False G54450
AMCG00009075 mRNA downstream 223865 24395954 ~ 24429749 (-) True AMCG00009075
AMCG00009073 mRNA downstream 336038 24313154 ~ 24317576 (-) True AMCG00009073
AMCG00009074 mRNA downstream 359986 24265497 ~ 24293628 (-) True AMCG00009074
AMCG00009071 mRNA downstream 411181 24235545 ~ 24242433 (-) True AMCG00009071
AMCG00009068 mRNA downstream 542035 24107205 ~ 24111579 (-) True AMCG00009068
AMCG00009082 mRNA upstream 124978 24783510 ~ 24787089 (-) True AMCG00009082
AMCG00009086 mRNA upstream 133870 24792402 ~ 24805280 (-) True AMCG00009086
AMCG00009093 mRNA upstream 231399 24889931 ~ 24895400 (-) True AMCG00009093
AMCG00009090 mRNA upstream 262695 24921227 ~ 24933161 (-) True AMCG00009090
AMCG00009091 mRNA upstream 275689 24934221 ~ 24942274 (-) True AMCG00009091
TU67499 other downstream 2470049 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4389529 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4389529 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 6784918 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 6906571 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 494734 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 515145 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 2135009 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2955066 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4399752 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile