RNA id: TU68072


Basic Information

Item Value
RNA id TU68072
length 2380
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G54450
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24813553 ~ 24847829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAACTGGTCATTAACTACTTTCCAATCACAATACCTTTTTTAATGATGACTAGACTTAGAAATAGTACATTGTTAACCGATTATATAGAGATTGCTATGCATTATTGATTATTGTAATGCATGTGATTTTATGCAATACACACCAGGTGGGGACTGATGAGCAAAACCACCCCTTCCTCCACAAtacaagaaaactgaaaatacattcagaatCTGAAGTGGGAAAGGGATGTTGAATGGTACTCACCTCTGCCACCTACATAACTGACAATCCAAGGCACATtgataaagaaaactaaaccaATTTAAGTACATTGAGAATAGACAGCCACTGTAAGCACAATTTTGATTAAGAGTGTCCAgacagcagaaaacaaacaggcaatacttttaaggaaaaacaaagtGTATTTGGCATTTATGGTATTGTATAGCACCAATGTCCACAGTCTACTTTATAGATGTACAAACAAAAGACACAGTAATGATGCATTCTTACAGTACTCCCATCATCCAAGTTCTTTTGATATTCCTAGTTTTACTTCTCTTTCGAAAACTATTGTGCAACATGTACCCTCTTCCACACTCCACACAACTGTAGCTCCCCAGCTTAGTTTGCTTGCAGCAACTGTATGAACTCTTGTGCTGTTAAGAGACCACCAATCACATGGCTGTACTACAATTGGAAAAAGCCagctggaaataaaaagaaattcTCCTTTAAAAGCTACAGTAGAGCAGTAGCATAAATCCCattgaaattttaaaaatggaagaaaatagaATAATTTAAAGCAATGCATTGTTTATAAAGTAATTTACCACAGTATTTAAAAGTTTCAGCCTCCTTGTCCACCCAATTCTACCATTTTGTCATGTGGTCTTACCTATAATTGATCTGCAAATACTTTACAATAGACTCTTCACccaatgaaattaaaatattaaaatgagctgCTTAAACTAGTGTTATGAAATATGTAACATcttctaaacaaaaacaaaaacttatttttttagtttttaaatagaaaactaaCAGTGTAGAAAAAAgattttgcttttccttttacCATGAGCCCCCAAACCAACTGATTTGTTCTGAATGTGGGAAaatgagaaactgaaagaaagtCTATTATGACTTCAACAAAAATGGTAGGCCAAAAGAATTCCTATAGCTTGTATGCGGTTGCATACAATATTTGCGTTTATCCTTCAGATGTTGAGTTATAACTACAcatcaaacacacatatatatatatatatatatatatatatatatatatacatacatacatacatacattatatatatatataacaaataattgGTCCCTGTTTGAACACACAGgttctgcagatctgcaaaaCTATTGTAACCTAATGATAGAAATCTCATGTACCATTCACAGTTCTTTAACACatatttacagtaatatttaTTGGCTCCGATGTCCCTTCATTCTTGGTGGCATTCTTCTAGAACTGCACCCCACAACGCAGCCCAAatttttgtatgtctgtgtatgtatctCCACAAAATCCAATCAAATGTTCTCCCATTAACACACAAGGCTCATTGAATATTTGTGTTACTACAGATGTTGAGTTTTtccaatgaaaagaaaacaaagaaaaaataaaacagatttcattttaaattttacactTGGGGGGgcaatgcaaatatataaactaCCGCAATTCTGTATACTTTTCATGTTGGTGGTTTAGATTGCAGTGGCGAGTCGCGCACTTTCCAGAGTGCAATTTCACTAGATTTCACTTTTGTGTTACATCTACTTTGCAAGTGCACAGTGAAACGTATGTCAAACACCATTTGCTAAAAAGATAAGCATTGATGAATCTCCTATTTTTATACTCCCTCCACCGCCCAtccatcttcctcctcctcctttcgTCAGTAACCCGGACATAAACTTTAAATCTCATTGGTCACTGAGACAGTCATTATAAGCAGGtgtgacaataataataataataataataataatatatttgaccATCAGATTTATGTTGGTTAcaggatacaaaataatacacttaAGTAGTGGTTATAAATGGCCAAGTATGAGATCAGCTTGACATTAGCAGCtggcattaaaatgtttttagatgCGTTTTAAAGAACGACAGCTTCCAAAACAGTAGGGTCTTTAACCATGCaggatttctttttaaaaaggccATAGTGATGACTTAGTGTAGATCCTTTCAGACACACTCCTCTGCAGACATCAAAAGGGGGTTGATGTATTCAAAGCCTTCAAATTCTGATTGATCAATCTTCTTGACCGCATCACTGAAAAtggaggggaaggggggaaaaaagtgaaaagggaCAGCTGAGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68063 lncRNA downstream 51911 24788395 ~ 24791263 (-) True G54447
TU68065 lncRNA downstream 53132 24788395 ~ 24790042 (-) False G54447
TU68021 lncRNA downstream 176940 24664305 ~ 24666234 (-) True G54415
TU68023 lncRNA downstream 176940 24664305 ~ 24666234 (-) False G54415
TU68011 lncRNA downstream 184642 24645630 ~ 24658532 (-) True G54408
TU68089 lncRNA upstream 34210 24882039 ~ 24884725 (-) True G54466
TU68189 lncRNA upstream 322402 25170231 ~ 25172840 (-) True G54548
TU68207 lncRNA upstream 435848 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 499383 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 612777 25460606 ~ 25462690 (-) True AMCG00009106
AMCG00009086 mRNA downstream 37894 24792402 ~ 24805280 (-) True AMCG00009086
AMCG00009082 mRNA downstream 56085 24783510 ~ 24787089 (-) True AMCG00009082
AMCG00009075 mRNA downstream 413425 24395954 ~ 24429749 (-) True AMCG00009075
AMCG00009073 mRNA downstream 525598 24313154 ~ 24317576 (-) True AMCG00009073
AMCG00009074 mRNA downstream 549546 24265497 ~ 24293628 (-) True AMCG00009074
AMCG00009093 mRNA upstream 42102 24889931 ~ 24895400 (-) True AMCG00009093
AMCG00009090 mRNA upstream 73398 24921227 ~ 24933161 (-) True AMCG00009090
AMCG00009091 mRNA upstream 86392 24934221 ~ 24942274 (-) True AMCG00009091
AMCG00009092 mRNA upstream 112764 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009095 mRNA upstream 115261 24963090 ~ 24967583 (-) True AMCG00009095
TU67499 other downstream 2659609 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4579089 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4579089 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 6974478 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 7096131 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 305437 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 325848 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1945712 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2765769 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4210455 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile