RNA id: TU68089


Basic Information

Item Value
RNA id TU68089
length 2687
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G54466
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24882039 ~ 24884725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTTCATTGTCTATACAGGGTATTTACAAGAGAGTTGAAGTTGAacaaaaaatccaaacaaaaagataaacaaaaatacacaaaacacaactgaGGTATTAGCTAAAAGCATATGTACTTCTAGTAAATATCCATTATGATAAACGCATAGAGATGCAGTGTCATTTGCTTAAAAAATCGTTTTATCACAACATGAGGTAGGAGGACAGTGTCTCTTTTCATGCAATGCAAGAACAATTGTTTCATCACACTGTATATTATTGGCAACATAGTAACATCGTATGCAATGGTCATATATAGACactgtttttgctttgtgttttaacagcaattaaaaaaaaaaaaatatttcaaatgattaCAAAGCCATAATGAGTCATATAgctattttatactttttttttttttttttttaataacgcCAACCAGTCCATTAAAGTGTAAGCAGAATTTTATGTATCAAATTGAACCATTCTTTTAAAAAGCCAGATAAGGAAACCACCACCCCAGAATCTGTAGGTTTGTGACTAACCATGTCAGTCAGAACTAAAAGAATTGTACAgcttaaaatcaatacaaaaatgtctGAAACAGGCGAGTCATATTCCTACGAGGTCATTCAAAACAGGGAGACAGGTTTTTCTCGACAATCTGCAGATAATTTGCAAACATGTCAATATgcaattagaaagaaaaacaaatagctaGTATTGGTGAGGAGACAGTTGTATTAGCATATTTTGTGGTAGttcttttaaatagttttacttTCAGGATTTGACCTTGAAAAAAATCCATGCCTATAGTTAGAACTGTTTATATTTACAAAGGGTAAAAGTCTGCTTACCACGACAGGCCTATATTGGAGCAGTTAAACAACATAGACATGTACTgaacatctttaaaatatatacatctgtatTTTCTTAACACTGCAGGTGCTACTGACCTGTGCTTTACTCGGTAGACAGGAGTTAATTCTAAAGTAAAAAGAGCTCCTTTCCAAATCTGGGCACACTGGAAAGATCCACTATAAAGCAGACCAAGGGCGCCCTCGGGTGGACAACAGGCAATTTACACACTCACCCAGAATATTTAACAGTAAAAGAAGGCTGCAGAGAGAAGAAATACAGAGTCCAGAGactatacattaaattaaattaaatgaagtaCAAAAATGGCATTATGTTAGATTCTGATGTTAGAGGTATTTATAACCAGGTTAAACATAATACTGATTATCATTTGTAGTTCACATTGTAAACTTAACAAATACAGTTTGTTATAATCCTATTCTCAAGACCTTTTCTTCACATCTGATTAGATTATAAATAAGCTTgctacatttgtacattttgtaagaGCAGAAAATAATTAGTTAAAAGTTAATTGTTTCGTTAAAGCAGTTTTAATATAATGGAATACATGGAATAAATTATCTATTTTCTAATATATTCTATAGgggcaattatatatataacacaatagGGGAGAAGGACCTATCCCTTTTCTCTCATTACAAATGGTTACAAAGTAGCAAGCCCATTTATAAATGAAGTTTATGTAACCTATGGCAGTTTGATTTGTGGAGAAGGACAAAAATGAATTACTGAGATtacctttaaataaaatttgcttcagataatgaaaaaacaattattttgataaatagATGAAACAGGAACACCAAGTGATTTGAGAATATCTCCTGTGCACATTGCTTTGAAAACATAAGCCCAGTGCTTTATTACTGAAGCTGGGGGAACCTGGGGTGAGTTAAGTGAGTTACTTAGGCTTTGTGGTCCAatcattgtttgcattttcttaaCTCTCTGAATTagataatattttgaattttcttCAATGGGATTAAAAAATACCCGGCTTTAGCCATATACCTATATGAAATGTACGAATCAGAATTTTAATTTGCCTCCCCTACAGCTGTCTACATAACGATTAATGGGTTACCGTTAAAATATGTACTGAGTGACACAGATTGGGATTGCACACTAACTGCCTGGACTTAACCGTTCAAAGTGCACACATTTGGATACTGAAATAACAGACGTCAGTAAGCGGCATTCTTGAGACTTGAGACAACGCTTTGCTTCAAGAGACTCTCTCAGGAcaatttgtgtcttttatttaaaaacatttttgttttgtttttttctctacagcatttaatttcattattaattcTGAATAATCACTTGTGTGCAACAGTGTTTAAGGATTGTGTAACACACTGGAGTAAAATGGTTACttttaaatagatgtataaataagggtaaaatacaaaataaaaacttgagaAATCTGACTTCACATGCTTCTTGCATCATCtcacacatttaaacaacagtCTTAATAACCACTGAGCAAAGGGACCCTCTTTACAATCTAGTAATGGGTTACAGGGAagtaacaaaacacaacaatattcTGTCAGCTTCAAACTATGGGCTTTAGCTTGTCCACACTCCCGAAACAAATGTTTACACCCGTTACAGGTTTGAAAAAACAAGTATacaaaaacctttttattttttgttgttttgttgcatttctTTATGAAAATTTGTAAATTTGGGGGGTCCATCCCCCCCCCTGCACCTACCCATCTTTGCTGGTTCTATCTATATAACCTTTTCAAGATTATTTGTACCAACATATCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68073 lncRNA downstream 34210 24813553 ~ 24847829 (-) False G54450
TU68072 lncRNA downstream 34210 24843174 ~ 24847829 (-) False G54450
TU68071 lncRNA downstream 34210 24845261 ~ 24847829 (-) True G54450
TU68063 lncRNA downstream 90776 24788395 ~ 24791263 (-) True G54447
TU68065 lncRNA downstream 91997 24788395 ~ 24790042 (-) False G54447
TU68189 lncRNA upstream 285506 25170231 ~ 25172840 (-) True G54548
TU68207 lncRNA upstream 398952 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 462487 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 575881 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 593963 25478688 ~ 25478901 (-) True G54594
AMCG00009086 mRNA downstream 76759 24792402 ~ 24805280 (-) True AMCG00009086
AMCG00009082 mRNA downstream 94950 24783510 ~ 24787089 (-) True AMCG00009082
AMCG00009075 mRNA downstream 452290 24395954 ~ 24429749 (-) True AMCG00009075
AMCG00009073 mRNA downstream 564463 24313154 ~ 24317576 (-) True AMCG00009073
AMCG00009074 mRNA downstream 588411 24265497 ~ 24293628 (-) True AMCG00009074
AMCG00009093 mRNA upstream 5206 24889931 ~ 24895400 (-) True AMCG00009093
AMCG00009090 mRNA upstream 36502 24921227 ~ 24933161 (-) True AMCG00009090
AMCG00009091 mRNA upstream 49496 24934221 ~ 24942274 (-) True AMCG00009091
AMCG00009092 mRNA upstream 75868 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009095 mRNA upstream 78365 24963090 ~ 24967583 (-) True AMCG00009095
TU67499 other downstream 2698474 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4617954 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4617954 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 7013343 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 7134996 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 268541 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 288952 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1908816 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2728873 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4173559 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile