RNA id: TU68185


Basic Information

Item Value
RNA id TU68185
length 2182
RNA type TUCP
GC content 0.42
exon number 2
gene id G54544
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25153266 ~ 25156338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAGTGACACATGCAGTGTTATTTTAGGTCTATTTTGTAGCTGCTACAGAACAGACACAAGTACTCCTTATTTGATCCagaatatttaacaaaatgttattttgtcaaGCAGTGGTCAATCATTAGCACATAATGTGGACCTGTCATTTGTCTTTCCTCATAGGCCAACAAGTGACTATTACGTACTGTGAGGCATACATTTAGTGCTTCATAATAGGGCCTTGTTCCAATGTTTCATATTCACCGCACACTTGGATACAGGTCATTAAGTCACATTATTTGCATACTTGCCACCCTGGATCCATAATATCAACAGGTATATTGCACTTCATGTTTTTAGTCTAATATTATTTGATATCAGCTTTTAATCTCTGAAACCAGTTTAATTTCTTGTAATGCCCAGGCCTGTGATCATCTAGTAGCCACACTTGGCAAATGAGGTAGCAGAATTAAACAAGGTTGTGGATATATGTGAATATAATGATGTGtggtacagaaatatatataattgacatATACATAATTTGTACAAAGGCCAATTGCCTGCTTTTGATGGTAAATAAACACAGGAATTCATGTTATTATAAACCATTCACATATCCAGCAGTTTATCACTCCATTATCACTTTATTCCTGATTTACAGACACCTCAAGAAACCTGGATTGTATGAGGTTTCCAAATGTTATCGGATCATGatggtaaatatattttcatttgacaTTCTATTTCATATGAGCCTACTGCAAAAAGTACCACGGTACTCGGCTCACTGGGTTACATTGACTGTTTAAGCATAATACGAAATGTCTTTCACTGAATTACCAATAAACCTCTCCCTACCCACAAGATGATCAGTTTAAACCTCTCATTGCCAAGGGTTACTGCTATGATAGAATATGTTCATGTCAATTAAGTTAATTGTTgagataattaaatatgcagtttgtttacttgtccattacacattttttttctatatttaaaccCATTAGGACCCAGatgataccaaaataaatataatttaataatcaccagaattattatatattttatgaatgcaGTATAAaagaataaactaaaaatagaatgccaaaccaaacaaaaacaagcaaacacaaactaaacagGTTCTTCAAAGACCCAGGGTAGGGACAAACAATTCTAAAACATCCCCTATCTTTATGACTCTCATTATCAGCTATCGTCCAAAGCTATTTTATATAAGGTTAAGTCCCCTTAACATTTGACATGAAAGGcaggatttaattaattattaattaatgccCCAGTCTTTGCTGAATGTCTAGCGGTCACCGTTCACTGGTTTGATGTCAGGGTACAGGAGGAAGCCAGAGAAGGTGGAGTCATTGATGTTGTCGGCATAGATCCCGCTGTAGTCTTCCTCGCCATAGACCTGAAGCCAGACTTCATCCCCTGAATCCAGGTGCTGGATGATGGAGCCTGAGGCCTGGTCCACATTGTTCTCCTGGAACTGGTCGAAAGTAAACATGATGGATTTGTCATTCTTGTAGAGGCTAACCTTGACGTCCTTCATGTACACGGTGAGGTGGTAGGTGAAGAAGTAGATGCCAGGTATGGTGCAGCGGAACTTGCCCGTGCTGTCATCATAGTGCCGCTGGTCATTGTAGAAGACCTTGTTGAACTTGATGGGTACATTGGGCATGGGTGTGCGGTCGGTCAACCCGATACTGAAGGCCGAGCGGTACAGGAAAGCACTCTCCCCCCGCTCACCCTTTAATCCTGGGGTGCCTGGGAAGCCACGGGGCCCCTCTGGACCCTCAGCCCCGTGCTCCCCTGGATCTCCCTTCTCTCCAGGTTCacCtggctctcctctctctcccttttctccaTCTCTGCCATCTCGTCCATCCCTGCCTGGTTGACCGTTGTGTCCAGGTGTACCTGGTACTCCTCCCATCCAACCAGCACAGGGCTTCCTGTCATCTGCCACCTCGTTATGTGTCTCTGAATCTGGTCCACTTGGTTCTTCTAGAGcagtttcttcttcttgtgAGAGGCACAGATTGATGACTCCCACCAAGAGGCAGGACAGCAGTGCCCAAGCCAGCTTCATGGTGACTGGAATCAATCCTCAGCCAACTGCAGGGGGTGTAGAAAAAGTCAGTGTTGTGAACCTTTGTCACTTTATCATTAAGCT

Function

GO:

id name namespace
GO:0061061 muscle structure development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68089 lncRNA downstream 268541 24882039 ~ 24884725 (-) True G54466
TU68073 lncRNA downstream 305437 24813553 ~ 24847829 (-) False G54450
TU68072 lncRNA downstream 305437 24843174 ~ 24847829 (-) False G54450
TU68071 lncRNA downstream 305437 24845261 ~ 24847829 (-) True G54450
TU68063 lncRNA downstream 362003 24788395 ~ 24791263 (-) True G54447
TU68189 lncRNA upstream 13893 25170231 ~ 25172840 (-) True G54548
TU68207 lncRNA upstream 127339 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 190874 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 304268 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 322350 25478688 ~ 25478901 (-) True G54594
AMCG00009099 mRNA downstream 9836 25116385 ~ 25143430 (-) True AMCG00009099
AMCG00009094 mRNA downstream 178610 24967917 ~ 24974656 (-) True AMCG00009094
AMCG00009095 mRNA downstream 185683 24963090 ~ 24967583 (-) True AMCG00009095
AMCG00009092 mRNA downstream 191339 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009091 mRNA downstream 210992 24934221 ~ 24942274 (-) True AMCG00009091
AMCG00009098 mRNA upstream 6247 25162585 ~ 25169182 (-) True AMCG00009098
AMCG00009100 mRNA upstream 17503 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009102 mRNA upstream 138623 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009103 mRNA upstream 194181 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009101 mRNA upstream 248330 25404668 ~ 25422813 (-) True AMCG00009101
TU67499 other downstream 2969701 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4889181 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4889181 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 7284570 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 7406223 17736589 ~ 17747043 (-) False AMCG00009001
TU68195 other upstream 17339 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1637203 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2457260 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3901946 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4504622 29660960 ~ 29670337 (-) True AMCG00009229

Expression Profile