RNA id: TU68189


Basic Information

Item Value
RNA id TU68189
length 464
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G54548
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25170231 ~ 25172840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAGTAGATTCAGACGATCAACAGCTCTAGCTGGAGTGTTTATTTGTGCTGGTATTAAATAAGTGAACTTAACAAAAGCAGATTATCATGAAGCCGGCTGTGGATGAAATGTTCCCGGAAGGAGCTGGACCCTATGTGGATCTTGACGAgGCAGGGGGAAGCACTGGACTTTTAATGGACCTGGCAGCCAACGAGAAAGCAGTACACGCCGACTTCTTCAATGattttgaagACCTATTTGATGACGATGACATCCAGTGACAAAACCCTGTGCACTGTAcacatctgtaaataaatattaataaaactgaaCAGAACATTCACATTCATGATCAGACAACTAAATGGACAGTGGAGGGTTTTTTTTGTGTAAGATCTCAAATTgatgggaaaaaatatatttggtatTCTTTTTGTTTGAACAATTGAATTATGtacagtgtattttgtttcccaaataaa

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68089 lncRNA downstream 285506 24882039 ~ 24884725 (-) True G54466
TU68073 lncRNA downstream 322402 24813553 ~ 24847829 (-) False G54450
TU68072 lncRNA downstream 322402 24843174 ~ 24847829 (-) False G54450
TU68071 lncRNA downstream 322402 24845261 ~ 24847829 (-) True G54450
TU68063 lncRNA downstream 378968 24788395 ~ 24791263 (-) True G54447
TU68207 lncRNA upstream 110837 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 174372 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 287766 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 305848 25478688 ~ 25478901 (-) True G54594
TU68250 lncRNA upstream 313230 25486070 ~ 25486488 (-) True G54597
AMCG00009098 mRNA downstream 1049 25162585 ~ 25169182 (-) True AMCG00009098
AMCG00009099 mRNA downstream 26801 25116385 ~ 25143430 (-) True AMCG00009099
AMCG00009094 mRNA downstream 195575 24967917 ~ 24974656 (-) True AMCG00009094
AMCG00009095 mRNA downstream 202648 24963090 ~ 24967583 (-) True AMCG00009095
AMCG00009092 mRNA downstream 208304 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009100 mRNA upstream 1001 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009102 mRNA upstream 122121 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009103 mRNA upstream 177679 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009101 mRNA upstream 231828 25404668 ~ 25422813 (-) True AMCG00009101
AMCG00009106 mRNA upstream 287779 25460619 ~ 25462655 (-) False AMCG00009106
TU68185 other downstream 13893 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 2986666 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4906146 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4906146 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 7301535 17868386 ~ 17868696 (-) True G53355
TU68195 other upstream 837 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1620701 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2440758 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3885444 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4488120 29660960 ~ 29670337 (-) True AMCG00009229

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU397559 True 263 lncRNA 0.33 1 CI01000138 252954 ~ 253216 (+)
striped catfish (Pangasianodon hypophthalmus) TU397559 False 369 TUCP 0.47 3 NC_047616.1 20242520 ~ 20246278 (-)