RNA id: TU68225


Basic Information

Item Value
RNA id TU68225
length 1799
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G54578
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25347212 ~ 25349010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatttttttatgcATGTGTATAATGTATCCTCCATTGCTTGGATTGCAGCTTTTGATTATGTTTAACTCTGTTGAAATGACCGTGCTAACTCAGGTTTTGTTGAATCCATGAAAGCTTCCTTTTCTAGACCAGTGATGTTGCATTCCAGTCAGTTCAGTCTAATTTATACTAGTGTAACACCGCAGACCATAGCTCTCTAGGAATGAGTTTGAAGAAGTTTGTTTCAGCTTGTATTACAAACACAGGTCATGGTCttccttttgaaaaatgtatgttaagGTTAAAATTGGGTTGCACTGTAAGGTCGTCTGGATCTGCCACCACTTTTCTGCTACATTTAGATtgctttataaatgtgttgcacAGTCTACATCAGAGCAGTGCTATTGTGGAGTGTTTGGCAATAGGTGGAGTATATGgtggagtttatttttatatacctATAGTAGTTTGTACACtgaatttatttgtacatttccaGCAACACAGAGTTATTTTTTCTCTATGCATAGATATTGGTCTGGAGTTCATAGCTCCAAGTGAGCCCTAGTGATGGACTGGCAGAATATAACTTTGTTTTCACAGATCAAGTTGGGGATGCACAGGTAACTGACTAAAATAAACTGTCAGGTTGACGTTGCTGTTCAAGATTTCTTCAGAAAGTGATCCgtttattaaaataaccacATCTTTATCAACAGCTATTCCACCATGCTTTTTTAAAGGCACTGATCTGAGTTTATTGCTATAAACATGTCACCTTTTGATTGGATCACAGTTCAGGGTGATCAACATTAGTGGTGCACAAATCCAGCAGGTTTCTTTGAATCACCAGCAAGTTCAGAGCTGGTCGTTAAATCCGTTCAAATCCCTGATTTAACCTCCTCCATGTCCAAACCCATAAATATTTTGGAAGCAATGTATTGAatgacatttttcatatttctggTTCTCACAAGTGAGAAGGGATGATCATAAATGTGAGCATTctctttttgaatatattacaCTCGTATATCCATGAAATACGTTGTTCTGTTCTTTACAGAATTTATACAGAAAATGCATCCAACACAGTGAGGTTCATATTTGTCAGTAAAACAAAAGGGTTACCTTGACCTCCTGTAGTTAATTAGTGAAGAAAAAACCTTTCACAGTTGACCTTGGTTTACTTCTTTTCCCCCTCAGTGGTTTCTTGTGACAGCCCTGGATCATAGCTTGTACGATTAACCTATGCTCTGTGTAGAATGTATTCATCACATGGCATTCGGTTTTATTGTAAAAGGGAATATCTAACACAGAACAGAAATTTGTAGTTTACATGTATGAATGGGAAAGTTCCTTTCTAGAAGTGATAATTTGTTGTCCATCCCAGAACATAGTGCACTGCAGTTATCCAGAGTACAATGAAAGGAATCGCCGTGCTGCACAATTTAGCAAAACATTTAAGCCCGCTATCTGTTTGCTTGCAGCCTAGTTGTGTAATGTCTGAGATGTGTGTAATCCACATGTTCTTGAAAAAACGTTAAACTTGATTTGCACAaagctgttatttttgttttgtttttttgatggCAAGGTACATGTTTAACCTATGAGAAATGCCATCAATGtgaataataatgcatttgaaatttCTGGAAGACCAAGTAATCttgttaaatatgtgtatatggTTTCctgtacagaatatattttacaactgtattgtttgtataggtgattgtaaatgcattaaagttattatgattattattacatagaGGCTTTTTACATCACAGTATATAATGATGTGATT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68207 lncRNA downstream 63109 25283677 ~ 25284103 (-) True G54561
TU68189 lncRNA downstream 174372 25170231 ~ 25172840 (-) True G54548
TU68089 lncRNA downstream 462487 24882039 ~ 24884725 (-) True G54466
TU68073 lncRNA downstream 499383 24813553 ~ 24847829 (-) False G54450
TU68245 lncRNA upstream 111596 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 129678 25478688 ~ 25478901 (-) True G54594
TU68250 lncRNA upstream 137060 25486070 ~ 25486488 (-) True G54597
TU68252 lncRNA upstream 137967 25486977 ~ 25488628 (-) True G54598
TU68265 lncRNA upstream 163823 25512833 ~ 25515018 (-) True G54610
AMCG00009102 mRNA downstream 45739 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009100 mRNA downstream 170935 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009098 mRNA downstream 178030 25162585 ~ 25169182 (-) True AMCG00009098
AMCG00009099 mRNA downstream 203782 25116385 ~ 25143430 (-) True AMCG00009099
AMCG00009094 mRNA downstream 372556 24967917 ~ 24974656 (-) True AMCG00009094
AMCG00009103 mRNA upstream 1509 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009101 mRNA upstream 55658 25404668 ~ 25422813 (-) True AMCG00009101
AMCG00009106 mRNA upstream 111609 25460619 ~ 25462655 (-) False AMCG00009106
AMCG00009105 mRNA upstream 180820 25529830 ~ 25531566 (-) True AMCG00009105
AMCG00009112 mRNA upstream 538401 25887411 ~ 25931495 (-) True AMCG00009112
TU68195 other downstream 170834 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 190874 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 3163647 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 5083127 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 1444531 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2264588 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3709274 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4311950 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 4900861 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile