RNA id: TU68252


Basic Information

Item Value
RNA id TU68252
length 1262
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G54598
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25486977 ~ 25488628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcttttacatttttttattcaatttttcaatGCTGTAAAATACCATTGAGAATAAGGTTACAAAGGCAATGACATCAGGCaaatttaaagattaatttattaGCAACACGTGTTTATAAATTCATGCTGTGTAACAATAGCTCAGATTGTTGCAATTCAACTTCCACTGCAGAGAAGGGAAATCGCTATAATTGTTGACCTCATTTATGAAATACATCTTGCAAGTTTTAAACGCCATCATTCACCGAAtgtcatttacaaataaaacagaaaactgtcAGATTAACACATTAACAGTGTGTCTCAAgagtattgtattttaatatttattcatcCTCACCAATACAATCTTTGAAAAGAATAATGTACTTTACCTATTTAGATTAATTGCATGTGCAAACTGACAGTATATGAGTGAAGAGTCCAAATAATGTATGTCCAAATAATAATGTCccagtaatgtaatgtatgtagagagatgtattttcaatcaaGAGGAATTTATTACGAGCGGCCGCATGGAAGAGGTTTTcgagaggcaatctcaagaacagtcttagagaagttacaaagtacaggcatttttatgcagaccagacaggaaagaaagataacaggctcacatgtctgtcccatgatgagtgcaagttcggtttctgcctgacaaatGGTCAGGGAGACCCATATATGACTAAACCGTTGAAAATTAAGGCATACgcaatgtttaatataagggggtcTTGTacatgtatcaagcccaaatccctggttcttatcagaccctgttcttatAGGTatctatagcacagtaccgtgAGACTAAGTCTGtcagacagtgaccttgtttacacaatcacacaaggaaagaaatgcagttctgcAATGAGTATCTTATTGTATAGAGTAAAGGTTTATATTAGGGaatatgtttctgtttattattattttgtattgtctcTTCCCTTAACACCTGTGAATCTCTGAAGAATAAGTATTGCACCTTACAAAGGTTTACCTCTTTTAAGCTTAATTAAGCAAAAGCATTGAAAAATGCATACACTTTTGCAGACTGCTATAAACTATTATGTGCTATGTAATGTATGTGGTGCAGTCATAGTGAAATAAAAGCCTTCCACTAGTAACTTTAAATCTCAAGTTTTGCTGGTTTGACATTAAACATCTGTGGAAGAAGAGTGTCGTCTTGTTCTTTTCCCAGACTTTCTGTCCTTCCTTTTTTCAGGTGTTTAACGatttctttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68250 lncRNA downstream 489 25486070 ~ 25486488 (-) True G54597
TU68247 lncRNA downstream 8076 25478688 ~ 25478901 (-) True G54594
TU68245 lncRNA downstream 24287 25460606 ~ 25462690 (-) True AMCG00009106
TU68225 lncRNA downstream 137967 25347212 ~ 25349010 (-) True G54578
TU68207 lncRNA downstream 202874 25283677 ~ 25284103 (-) True G54561
TU68265 lncRNA upstream 24205 25512833 ~ 25515018 (-) True G54610
TU68269 lncRNA upstream 33493 25522121 ~ 25524025 (-) True G54613
TU68271 lncRNA upstream 41201 25529829 ~ 25531565 (-) False AMCG00009105
TU68350 lncRNA upstream 601751 26090379 ~ 26090785 (-) True G54682
TU68366 lncRNA upstream 761918 26250546 ~ 26250857 (-) True G54697
AMCG00009106 mRNA downstream 24322 25460619 ~ 25462655 (-) False AMCG00009106
AMCG00009101 mRNA downstream 64164 25404668 ~ 25422813 (-) True AMCG00009101
AMCG00009103 mRNA downstream 118563 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009102 mRNA downstream 185504 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009100 mRNA downstream 310700 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009105 mRNA upstream 41202 25529830 ~ 25531566 (-) True AMCG00009105
AMCG00009112 mRNA upstream 398783 25887411 ~ 25931495 (-) True AMCG00009112
AMCG00009113 mRNA upstream 453497 25942125 ~ 25950002 (-) True AMCG00009113
AMCG00009114 mRNA upstream 570913 26059541 ~ 26060656 (-) True AMCG00009114
AMCG00009118 mRNA upstream 986051 26474679 ~ 26483701 (-) True AMCG00009118
TU68195 other downstream 310599 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 330639 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 3303412 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 5222892 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 1304913 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2124970 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3569656 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4172332 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 4761243 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile