RNA id: TU68350


Basic Information

Item Value
RNA id TU68350
length 407
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G54682
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26090379 ~ 26090785 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGAAGGAAATATTACCAAAGCTTTACAGGATATGAGAGACGTTGCCAAGCAGCTTCAAAAAGATGAAGTGGGAGAGGAAAGTTGGGGATGGTGGTGGACGATGTTTGGGTGGTTAGCACCTTATGTATCCATGGCTTTACCTTGTATAATCATTATCGTATTGTTGGTGTGTTTTGGTCCATGCATCTGTATGTGTATTCAAAATTGTTTAACTAACATGATGACTTCAATGATGGAATCTGTGGATCCTAAAAGGCTTTGTGCCCACCGGGCCCAGCTAATGAAAGCTAAGGATCATGCTGGAACCAAGTATTAATGTAACTGTCGCTATGCTCCATATTACATTAAAGAGGGCAactgtaaggatttttatataacatatccATATACTAACTGTTGGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68271 lncRNA downstream 558814 25529829 ~ 25531565 (-) False AMCG00009105
TU68269 lncRNA downstream 566354 25522121 ~ 25524025 (-) True G54613
TU68265 lncRNA downstream 575361 25512833 ~ 25515018 (-) True G54610
TU68252 lncRNA downstream 601751 25486977 ~ 25488628 (-) True G54598
TU68250 lncRNA downstream 603891 25486070 ~ 25486488 (-) True G54597
TU68366 lncRNA upstream 159761 26250546 ~ 26250857 (-) True G54697
TU68375 lncRNA upstream 316798 26407583 ~ 26407864 (-) True G54706
TU68408 lncRNA upstream 438454 26529239 ~ 26532315 (-) False AMCG00009121
TU68409 lncRNA upstream 438454 26529239 ~ 26532315 (-) True AMCG00009121
TU68478 lncRNA upstream 536021 26626806 ~ 26649993 (-) True G54792
AMCG00009114 mRNA downstream 29723 26059541 ~ 26060656 (-) True AMCG00009114
AMCG00009113 mRNA downstream 140377 25942125 ~ 25950002 (-) True AMCG00009113
AMCG00009112 mRNA downstream 158884 25887411 ~ 25931495 (-) True AMCG00009112
AMCG00009105 mRNA downstream 558813 25529830 ~ 25531566 (-) True AMCG00009105
AMCG00009106 mRNA downstream 627724 25460619 ~ 25462655 (-) False AMCG00009106
AMCG00009118 mRNA upstream 383894 26474679 ~ 26483701 (-) True AMCG00009118
AMCG00009120 mRNA upstream 400092 26490877 ~ 26494273 (-) True AMCG00009120
AMCG00009119 mRNA upstream 423341 26514126 ~ 26520134 (-) True AMCG00009119
AMCG00009121 mRNA upstream 431848 26522633 ~ 26532410 (-) False AMCG00009121
AMCG00009124 mRNA upstream 525144 26615929 ~ 26624943 (-) True AMCG00009124
TU68195 other downstream 914001 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 934041 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 3906814 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 5826294 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 702756 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 1522813 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 2967499 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 3570175 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 4159086 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile