RNA id: TU68381


Basic Information

Item Value
RNA id TU68381
length 1864
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G54711
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26489149 ~ 26491161 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGTAGTGTTACCAAAACATactcctaacaaaaacaaaaaggacaacctccaaaaatattttcctttctttattgaCAAGAGTGTAgatttgtacaacattttaaaataacgaaATACCAGACTCCTGAAGTCCCTGCTTTAGCACACCTGTAACAAatctaaactaaaaataaattaataataacacatttaacacaatATAACCTTCTTCCACATAGCACAACCTGGGAAGTTAACAGGAAAAGGTGTTTTATAGATCATAATAAAGAAATTGGCTGGAGGACATCAtgcaaatcattataataaaggGAAAAGCCTAAGAGCGAATTAGTCATTGGTTATTCCATCTGCaactcatatttattttaatatttatttccccatCCGATTTGTCGAgagctgtgtttttgtatacTTTGTGGCAGGAGCTCAATGAGTTTCATTAATCAGTGATTTGAAACCAAACTAAATTACAGAACAtcaattattttgctttgctCTGCAAGGAAGGATACATGTGCATTACTAATTATTCTGATACACGGCTGCCTAATCTCTTAACAGCAAGTTTCACCGAGGCATACGAACACTGCAATAGGACAaagctgggggagggggggagaacaaaaaaaaaaaaaaaaagttttgTTTCCAGTATCTGGAAAACAgtgttaattaagttaattaaaccCTACCATGAATGAAAAAAGCAAGACCAATATGTAACCCTTTATCAGTTCATATTAAGTGCAGGTTACAAAAGCCACACAACTGGGCACACTCTGAAGACCATCTATAGGATGAGTAGTCaccattgtatttatatatatatatatatatatatatatatatatatatatatataaattaaataaaaggccATGCTTTGTAGAAGTGCTGGATTTAAATACTTGAAAGGTTTaggaatagaaaaaatatatatactgctaCAACTTTCAACATAGGACACTGGTCATTGCAGAAGACATCCAGTGAACTACTTCATTATTTCTCCAAAACTATACCCTTAACATCTTACCAATTCAAAATTTTATGTAGCAAACCgccatatttttattaaagagTACAAACACTGAATTAACTTGAAACACTTACCGACaagaaccaaaataaaatgtaaaaaatatacgCTGGccttctgtaaataaataagtggagTGTACAGTGCATGCACAACGCAGAAATGCAACTTTCTTGTTTGAAGCAAGGAGTTCCTacacaagacaaataaaattaaataaacacacaacaaactgaaatccacaaacagaaacaaaaatcaattgaactacaaagaaaaaactaatcaCATAATGGTAATTTTGTTAATATCAGACAAGTGTGATTAACTTGGTAATAtgttccctttctttttcatctTCAGTACATTCACAGAATCTCTAGCTAAAGCAGTGAATCACATACTACTAGAAAGTgctagtgtttttaaaataaaggcttTGGTAAGTGTGCAGTCACTGACAAAAGGAGATCACTTGTACATCACAAATACAATGCCTCTGTGGTTTACAGCCGGGGGGAGCTGACAGTGAAGCTAAAACACCCAGAAGAGAGACCCCAGGGCCATGCCAGTCGCTGCCCCTGCGAGCATGCCCAGTGCCACATCTCCGTTGTCATCGCGGTAACGCTCACGGACCACGACCTGATTCACTCCAGGGGCGGGGTAAGGGCCTGGAAAACATTCACATCAAACTGCCTTGGAGattccatttcagttttttccccccatttatGAATACAGTGGTATCAGTTAGAAGTGTGCTGAGATGAATTCTGCATTCACTTTTTCCATTCAAATCTCTGCTTAGTTACGATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68374 lncRNA upstream 81335 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 967835 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 971240 25516373 ~ 25517909 (+) True G54608
TU68253 lncRNA upstream 995576 25489874 ~ 25493573 (+) True AMCG00009104
TU68232 lncRNA upstream 1075327 25404670 ~ 25413822 (+) True G54580
TU68395 lncRNA downstream 47158 26538319 ~ 26540200 (+) True G54724
TU68461 lncRNA downstream 159321 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 296663 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 300412 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 302376 26793537 ~ 26796768 (+) True AMCG00009129
AMCG00009110 mRNA upstream 773101 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009109 mRNA upstream 815137 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009111 mRNA upstream 849294 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009108 mRNA upstream 901534 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009107 mRNA upstream 914585 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009117 mRNA downstream 6691 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009115 mRNA downstream 30703 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009116 mRNA downstream 41287 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009123 mRNA downstream 74527 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009122 mRNA downstream 145326 26636487 ~ 26643471 (+) True AMCG00009122
TU68288 other upstream 901539 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1571286 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1672615 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2513243 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5195248 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 1122422 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2275293 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2437731 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2612479 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2612479 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile