RNA id: TU68395


Basic Information

Item Value
RNA id TU68395
length 1882
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G54724
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26538319 ~ 26540200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgttttaaaccatACTCCATTGATATTTTCTGATAAAGGCTTGTTAGAAAGTGTATAAATTCAGTTACATTGTTACTTTGCAAAAatgcaactgttttttttttaattaagtgtatTTCTTTCACACATACTATGATTCTTTAAGTAATCTATAATAGGGTGATTATCTTTAAAAGTGTGAGaatgccaaaacaaaaatattgcatACCATACAACAAAGGAAATTTTACATGATCAAATCCATCTTGAgtcaaacaatgtattaattcacAACCACCATCCAATCAGACTTTTGTGATTGAGCTTTTGATTTGGACAGTACTTTTGGTCAGAACAGCATGTTTTtgatacaaagtatttacaggATTCTGATTGAATCAAACTCCTGCCGCTGCAGTTCCCTATGGGAAAATatcaaaacatataaacatttcaGACCAATTTGTGGCATGCAAAGACCTGAACATGTTTGCACTTTTAAAGAAGCCCTTCTCTGCACTGTGCTACAGCCCTAATGAAATACATACTTCCAAATCTGAGCACATACAAATGGTAACATTTTGGGATTTCTTTCTGAAAAGCACACTTTTATTGACACTTTTAAAACCTGTTCATACAGAAAGATTGAGATAAatataaagttatttttaaatcttatgtATTACAGAAGTAAAGTTAACTTAAGCAACTAATAActcaggcagcactgtggagtagtggttaggtaCAAATCCCAGGTGAAGTGgtgttgttgtacccttgagcaaggtgcttcactgagattgctccagtaaaatgcccagctgtataaatgggtacaaatgtaagacgccctggataagagcatcagctaaatgacaaaaataataatagtaaaggGTAATTCAAAAGCTAGGGTGATTTTCTTTAagctgtaatattttaaatttgattttaatatcaacacttgtttaacttttttaatgtttttttacattttaatacatttaaaaaagattaataaacaagtgtattttattcaaataaatatgtaaatattacaatttaaactttaaatataaatcatctTCTTccttgaattgttttttaattagttatagATTAAAATTGTGTTCATAAAAAGCATCCAGTTTAAAAATCTGATAAAATTCAAACTGACTCAAAATTACTAGTTGAGGTTAATTCAGGATATGAATCTCCACCAGTTCCAATGGGCACATAAACAATGTGTAGAGAGGTTGCTGTTCTCATACTCATTATTTCATGCCAAAAATGAGGAAAATCCATAGTTGGAACTATTGACATAAATAAGACTTAAGTAAGAATAATTGTGTGTTCCAAACAGAATGTCCAGTTTTGTGTGGAACTGATTTAACTTAACTTATAGATCTTGCAATATATGTCAAATATCCCAGGGAACCTTCAAACTAACAGTGCTTTTCCTGCTAGGCAAAACAGAAGGTTAGGTCTAGTTTCATTTTTAACTTATGTTAAAGATAACAACTTCTGATAAAACCGGTGTTGCACAAGCTGTACTGGAAGGCTATCTTTGGTTATCTAACTTAATCTATCTTTGGTTATCTAACTTAATCTAACTTTGGTTATCTAATTAATCTTTAAGGGTTAACTAGACCAACTTTTACAGCTTAGGGTTATGGTGATATACACAGACCCATGAAATCTGCTGCATTGTGGCCTTTCAGCACTGTGGTTGGTCTTGCACCCCTAGGACAAACCAACCTGAGATAAATTTTCCAAATGATGCGTTTTTGGCTTTTAGGACTACAAACATATGCTTAACTAACCATGGATGAGCGCATCGCtttaagtgtttttgtgtttgtatttgtgagaATAGTGAATAAACCCCATACAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68381 lncRNA upstream 47158 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 130505 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 1017005 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 1020410 25516373 ~ 25517909 (+) True G54608
TU68253 lncRNA upstream 1044746 25489874 ~ 25493573 (+) True AMCG00009104
TU68461 lncRNA downstream 110282 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 247624 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 251373 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 253337 26793537 ~ 26796768 (+) True AMCG00009129
TU68500 lncRNA downstream 270451 26810651 ~ 26814492 (+) True G54806
AMCG00009116 mRNA upstream 77 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009115 mRNA upstream 9828 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009117 mRNA upstream 28680 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009110 mRNA upstream 822271 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009109 mRNA upstream 864307 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009123 mRNA downstream 25488 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009122 mRNA downstream 96287 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009128 mRNA downstream 242337 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009129 mRNA downstream 253990 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009138 mRNA downstream 261274 26801474 ~ 26801849 (+) True AMCG00009138
TU68288 other upstream 950709 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1620456 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1721785 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2562413 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5244418 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 1073383 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2226254 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2388692 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2563440 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2563440 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile