RNA id: TU68461


Basic Information

Item Value
RNA id TU68461
length 1335
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G54777
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26650482 ~ 26660346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatgGTTTGAGTTGAATGCATATGTAAACAACCATACACATACAAAGATAAtatacaaacactttttttttttctttgcctttttttttttaaaccaaactaTACTTACATTTCACAAGTGCCTAGTTCACTctgaaatagaaaacattgcagGAAGCGTAATCACTGACATTCTCCCACAGTCAGAACGAAACATCTTCAGAAAGTTTGtcaaaatatgtacataaatattgcattttctgGACCTTAATGCTGTAAATACGTACTGGTAAGCAGACAGATTTGTACATCAAATATACCTTTGcagattagtattattattttttttctgttttggagcATTTGCACAATTTGCAATTGATTGCCAAATTGTTGTCTAGTCTTTCTCCTAAAATGTAAAAGGAATTAAACCAAATGTAGATCATTGAATTctacctgaaagctttgcaccTGCATGTTCAGGAGAAATTTTAGCCCGGCAACTTCTCATACTAATCAATACCAAGGTAAGAGTACTTGTAACAGCACTTCGGCAGCCATGTTGTGTTACAATATGGATTTACTGTGaacaaaatgctgtttttcatgCAATAAGGTaccatacattttgatttaatttaatccaatgCAGAACTACTCGTATGAACAGGTACActgatttgttgatttatttaatctgcaaCCCATTATTTCATTACCATGGACCAGCAAATGCAAACTAGACACTAGATTTATTCCCAATCCAATTAGcttgaaaaaatgttttcaagcaTTCTGGCATGCATTCTTATGCTTGCTTCATAATAGGTTGACTGGATTtttattcaaagaaaaaaactgaaaatcataCATGGTTGGATTCAAAGCACCACCATCTTTAAATTGAGCAGTGCAGTGAATTTGCGCGTTGGCTTCCCGTTCAGAGCGTACCTGACAGGATATGTAGCAAACCTTCTGTTCTGAAAACTACATGCAGAATGTTAGAGGTCGTCtacaatgtacaataataaagtTCTGCTATTTCCATTTTAGATACCAATTTACAATGGTAGTGAAAAcaggaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaacaacaaaccaagGTTGCAGGTGCTGGGTGCTCACCTCACAGATGTCTTTGAGGTGTTTGATGTAGTCCCTCTCGGTGCTCATGATCTCGTTGATGACATTAGTCCTCATCTGCTCCTTGCTGGGCAGGGCGGGTCCCAGCCTCCGGCCCATGCTAGCACTGTCCTCCTCATGCCCGTCCTCCAGCTTGGCTAGGTACTCCTCCATCGGCTCATCCTGATTCACACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68395 lncRNA upstream 110282 26538319 ~ 26540200 (+) True G54724
TU68381 lncRNA upstream 159321 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 242668 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 1129168 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 1132573 25516373 ~ 25517909 (+) True G54608
TU68501 lncRNA downstream 127478 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 131227 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 133191 26793537 ~ 26796768 (+) True AMCG00009129
TU68500 lncRNA downstream 150305 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA downstream 150305 26810651 ~ 26811251 (+) False G54806
AMCG00009122 mRNA upstream 7011 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009123 mRNA upstream 75040 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009116 mRNA upstream 112240 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009115 mRNA upstream 121991 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009117 mRNA upstream 140843 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009128 mRNA downstream 122191 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009129 mRNA downstream 133844 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009138 mRNA downstream 141128 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009130 mRNA downstream 169853 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009139 mRNA downstream 238263 26898609 ~ 26903272 (+) True AMCG00009139
TU68288 other upstream 1062872 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1732619 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1833948 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2674576 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5356581 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 953237 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2106108 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2268546 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2443294 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2443294 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile