RNA id: TU68500


Basic Information

Item Value
RNA id TU68500
length 2529
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G54806
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26787824 ~ 26814492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTTTCTGAAGCGTATTTTGAAATTTTACGAAAATAACTGAACACTGGttaactataaaatatacacacacaacaaaaatcaCGGTCACAAGTTTTGAGTTGGAAAACACTTTATTTCTTGATTTGTTGGGAAATGTTTCAATCAAAACCCATCTTCCTTCACTAATTCAGTGGGGATTGGTAGCATGTGCCCAGGGATGGATATTTGAAAGGCACTCCTCAGTTCAGGTAACAATGGATTCAGTCCAGTCTCTGGCAGGTGTGGAAAGTGCAGGCTTTCACAAGACTGATTGTCCACAGGTGCCGAGCCCTGTCACAGAGTCATAGTAGTATTTCCCAAGGAAGTCTTTGAAGGTTTTAGTCTCAGGAACTTCTTGCAGACACTGAGTGGAGTCCTTAAACAGGAGGTTGGTTTTGTCTAGGTCTTTTGGCTTAAACTCATTGAAATACTCTTTGAAAGTGGTTCCAGATGTTGGCTGCTCTTTCAGAATCTTGACAACCTTCTTCCGGGCTTCTGGACGAGTCATGACAGCATGTGAGGGCACTTTAGCCAAGTGGCATTCTTTATACTGGCTTACATCGACAGATGATGTGGGTTTACTGGGACACACCAGCTTGTAGTCGGACCCAACCAGCTTTGAGGCCCAGGATGCGGTGTTCATCAGTATTCTCTTGCACAATTGTGTGTTTCACAAATGCTACATCACCCTTTCCTTCTGCCAAGCACCTGAGAATAAGAAATAAGGGAAACAAGATCATGGAATGGAGTAGCAAGTTGTGATCTGTTCCAGTACTTGCTATACTGTATTCTCACTAAAAAGGTGTACGCATACATTGACCTGTTCTTGTCTGTATTATTGCATGACATTTCCCTGGAATAAAATGCTCTTACAGGGGACATGTATGTTGAGGTCTCCATATACAGGGAATTAAAGCATTCCTACCTGAATGCTCCAGCATATCCATAATATAGCTCACTAGAACTGGCATCACATTTGGATTCATCTCTAACAATCTTCGACATACTGCCAACACACAGATCACATAGATGGGAGGATTTATCAGCTCCTGGAGCACAGCTCTTAGGGAAGAATTGTAAAAGTTGCAGTTTTTGATGTCTTTGTTTTCGTGCAGAATAATACCCATGGGGATATTCCACCCTGCAGTACGACCCAATCCCGTGTGGCAGGATTTCTTTCCTCTCAGTGTCTCCCAGGTGATTCCCGAGCCCTTCACAACAGCCACAGCGTAATAGGAGCCCAACTCTAAGTGTCAAAGTGTGTAGTGAAGCAGGAACAtcagaaaagaacaacaactaattacacatttacactgaAGCTATAatgacacttaaaaaataaatgaacattatgtatattttcttaaagcTATTGAGTTGAGATGTTTCTTGCTtacttcaaattaaattctAAACACGAACACAAATTATTTGCTCTAATCTTGTTCAGTTTTTCTGTGCTCAATCTCAGGTCCAGTGTTAGACTGCTGGATACATGCTGTAGTCACTCCCACAGCAGTACACATTAATTCAGGCTCTCTGTTACCTCATACTGATATTCTCAGTGTACATTAATGTcacacattaatataataatgtccATTCCAAAACTGTTAGCATGTGAATCAACACTACCTGTCTCTCCTTGTGAAGTGCACTTATCTgtgaagacagagagagaaataatagTTCAATTTGAGGAGTGCTACTTGGCAGTCTTTTGGACAAgtttacatgaaaatgaaaacagcaacaaaacaaaacaaattctatGCTTTTACCATGCTGTATATAATTAtagcacaaaacacacacacacacacacacatacatatagagatagatagatagatagacaggtTGACATTCCTATACAGGAAAACTTGTGGGTCCAGGATAGACACCCATCTTACCTTTGTCATACTGCTCTGCCATGGCTGGCACCAGGCCACACTTCCCTGCAGAAAATACCTGCCCTCCATCTACGGCGATAGCATCTGCTTCTTCCcgctgagagagaagagggaggcAGTTATCAACCATGGGGTGCATCTAACCTCTGTGGGTCTTTGAATGACATACAACAGAGCAGAAATTGTGTATCTGAATAAAGCATCCTTTACTTTATcatatagtttaataaaaatatgtaccAAACTGTACATTTTGAGGTTCAGTTGTTTCCTTAATTCAGAACTGCTTTGTATGTCTTCCTCCTTGTCAATCTACAGAAATGTTCCTGATCTTCCTTTAATCATATATTATTAGATAGTGGTCCTCTCAGTGTACTCCCCTCTTCTGCATCCATGTTTCACTCACCATGATCTTCCTCAGACATTCATCAACTGATTCCCCAGTGACACATGCAATTCTAGCATCGCCTCTTTCATCTAGGGTGTTAGAGCTCCAAGCGTCACACATTCTTTCCTCCGCGTGGCCCACGGCACACCATGTCACCTTCTCTTGGGGGCGGCTGGAACTTGCCGCTGAATTGCAATGGAcaagaaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68507 lncRNA upstream 13883 26793537 ~ 26796768 (+) True AMCG00009129
TU68501 lncRNA upstream 18250 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA upstream 18250 26791573 ~ 26792401 (+) False G54806
TU68461 lncRNA upstream 150305 26650482 ~ 26660346 (+) True G54777
TU68395 lncRNA upstream 270451 26538319 ~ 26540200 (+) True G54724
TU68512 lncRNA downstream 7804 26822296 ~ 26824929 (+) True G54812
TU68536 lncRNA downstream 34730 26849222 ~ 26851003 (+) True G54833
TU68587 lncRNA downstream 168351 26982843 ~ 26984157 (+) True G54880
TU68641 lncRNA downstream 282045 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 296388 27110880 ~ 27117923 (+) True G54936
AMCG00009138 mRNA upstream 8802 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 13884 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009128 mRNA upstream 24861 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009122 mRNA upstream 167180 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009123 mRNA upstream 235209 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009130 mRNA downstream 15707 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009139 mRNA downstream 84117 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009140 mRNA downstream 155393 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009145 mRNA downstream 180466 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009146 mRNA downstream 222837 27037329 ~ 27058960 (+) True AMCG00009146
TU68288 other upstream 1223041 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1892788 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1994117 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2834745 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5516750 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 799091 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1951962 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2114400 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2289148 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2289148 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile