RNA id: TU68501



Basic Information


Item Value
RNA id TU68501
length 1144
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G54806
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26787824 ~ 26814492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


attgttttctgataaacagtaatttcatataattcataatttggGCCCATCATACCAGCAGCTCTTTCAGAATCTTGACAACCTCCTTTCGGACTTCTGGACGAGTCATAACAACAGGCGAGGGCACTCTAGCCAAGTGGCATTCTTTGTACTGGCTTACATCTACAGATGATTTGGGATGACTGGGACACACCAGCTTGTAGTCGGACGCAACCAGATTTGAGGCCCAGGCTGCGGTGTTATGTCACCAGTGTTCTGTTCAATAGTTGTGTGTAACACAAATGCCACATCACCCTTTCCTTCTGCCATGCACCTGAGAATAAGAAATAAGGGAAACAAGATCATGGAATGGAGTAGCAAGTTGTGATCTGTTCCAGTACTTGCTATACTGTATTTTCACTAAAAAGGTATACTCATACATTGTCTATTATTGTATGACATTTCCTTGGAATACAATGCTCTTACAGGGGACATGTATGTTGAGGTCTCCATATACAGGGAATTAAAGCATTCCTACCTGAATGCTCCAGGATATCCATAATATAGCTCATTAAAACTGGgatcacatttgtatttatcttcAGCAACCTCTGTTTTCCCACTGCCGATGCACAGATAACACAGACTGGAGTTGCAGTCTTTGGTTTCCTTCAGAATAATACCCATGGGGATATTCCACCCTCCAGTACTTCCCAATTTTGTGTGGCAGGATTTCTTTCCTCTCAGGGTCTCCCAGGTGATGCCTGAGTCCTTCTTCACAACAGCCACAGCGTAATAGAAACCAAACTCTTTTTCTGCAGGGAAGTGCCACCTGGTGCCAGCCATGGCTGAGCAGTATGACAAAGATAAGTGCACTTCACAAGGAGAGACAGGTAGTGTTGATTCACATGTTAACAGTTTTGGAATggacattattatattaatgtgtgACATTAATGTACACTGAGAATATCAGTATGAGGAAACAGAGAGCCTGAATTAATGTGTACTGTTGTGGGAGTGAAAAATTTAAGAAGATACTCTATTAGAGCAAAGAATTTGTGTTCTTGCTTAGGATTTAATTTCAAGTAAGCAAGAAACACCTCAACTCAATAGCATTAAGAAAGTATACATagggtaacgagctgagattaggagcactcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68461 lncRNA upstream 127478 26650482 ~ 26660346 (+) True G54777
TU68395 lncRNA upstream 247624 26538319 ~ 26540200 (+) True G54724
TU68381 lncRNA upstream 296663 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 380010 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 1266510 25521019 ~ 25521314 (+) True G54609
TU68507 lncRNA downstream 1136 26793537 ~ 26796768 (+) True AMCG00009129
TU68500 lncRNA downstream 18250 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA downstream 18250 26810651 ~ 26811251 (+) False G54806
TU68512 lncRNA downstream 29895 26822296 ~ 26824929 (+) True G54812
TU68536 lncRNA downstream 56821 26849222 ~ 26851003 (+) True G54833
AMCG00009128 mRNA upstream 2034 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009122 mRNA upstream 144353 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009123 mRNA upstream 212382 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009116 mRNA upstream 249582 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009115 mRNA upstream 259333 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009129 mRNA downstream 1789 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009138 mRNA downstream 9073 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009130 mRNA downstream 37798 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009139 mRNA downstream 106208 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009140 mRNA downstream 177484 26969885 ~ 26981851 (+) True AMCG00009140
TU68288 other upstream 1200214 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1869961 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1971290 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2811918 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5493923 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 821182 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1974053 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2136491 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2311239 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2311239 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile